Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64500 307 / 2e-102 Glutaredoxin family protein (.1) AT5G06470 149 / 8e-43 Glutaredoxin family protein (.1) AT4G10630 143 / 1e-39 Glutaredoxin family protein (.1) AT5G58530 136 / 1e-37 Glutaredoxin family protein (.1) AT5G03870 136 / 1e-36 Glutaredoxin family protein (.1) AT3G57070 133 / 3e-35 Glutaredoxin family protein (.1) AT2G41330 133 / 3e-35 Glutaredoxin family protein (.1) AT5G39865 129 / 5e-34 Glutaredoxin family protein (.1) AT5G01420 129 / 6e-34 Glutaredoxin family protein (.1) AT5G13810 125 / 1e-33 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008270 [exp] 148 / 3e-41 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10033238 [exp] 145 / 3e-40 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10021353 [exp] 147 / 5e-40 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10017029 [exp] 145 / 1e-39 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10028742 [exp] 140 / 2e-38 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10021255 [exp] 129 / 1e-35 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10017547 [exp] 133 / 2e-35 AT5G01420 227 / 2e-71 Glutaredoxin family protein (.1) Lus10001669 [exp] 130 / 9e-35 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10013597 [exp] 127 / 1e-34 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141800 [exp] 374 / 1e-128 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.001G088900 [exp] 304 / 8e-102 AT1G64500 240 / 6e-77 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 157 / 4e-45 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 152 / 3e-42 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 151 / 5e-42 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 146 / 4e-41 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 148 / 8e-41 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 144 / 5e-40 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 139 / 1e-38 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 141 / 3e-38 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10003194 pacid=23155737 polypeptide=Lus10003194 locus=Lus10003194.g ID=Lus10003194.BGIv1.0 annot-version=v1.0 ATGGGGTGCGCCTCTTCCAAACGCATCGAAGCCGCCGTCGACATCTACCGCCCCCCACCTTCCAGCTTCGCCGTCTTCGACGTCGCCTCCATCCAAGAAC CCTGGCTCTCCTCCGCCGACGAATCCCAACTAGAAAAGCCGCCGCCTTCCTCCGATAACAATGTCCCGCCGCCACCGCTCCTCCACAAGCTCAACAAATT GGAATCTGCCGCCGATGACGCCCCTCGTTCCTGGGATGAAGTTAGCAAGGAGCTTGAAGACCTCAAACCAACAATCAAACCAATTTCCGCCGCCGCCGTC AATCCTCCGCCGTCAAAATCCCCTGTCCATCCGCCGCCTATGAAGCGCGAGCCACGGAGGAGCTTCTCCTTCCACACCCTCGAGGAACTCGACTCCAAAT CCACACCCGCAAAACCCAAGATGAGGAAATCCGAATCCGCTCGAAGCCTCGTCAATTTGAAAAAATCATCCAGCGCCGTTACCGAGTCGAGTTTCGCCGT TAAGTCTCCTTCAGCTGACACGGCCGTCGTGAAGCCGGTGAGGGGGAACATCTTTATTCTCCGGGATAGGATGGAAAGGGAGAAAGATGGGAAAGCGGAT TACGTAGTAAGGCGGGGCCCGCTGGACGATTTCCCGGAGAACTGCCCTCCGGGAGGATCCGACGCGGTGGTGGTGTACACGACGTCGTTGAGGGGAGTGA GGAAGACTTACAACGCGTGCACACGGGTGCTGAGCCTGATGGAGCTGCAGAGCGTGGCGACGGACGAGCGTGACGTGTCGCTCCACGCCGAGTTTCTAAC CGAACTGAGGGAGCTGGTCGGGGAAGAAACCGAGTCGAGTTTGAGTCTTCCGAGGGTGTTTATCAAAGGGAGGTACGTCGGAGGGGTGGAGGAAGTGGAG GCGCTGAACGAGTCAGGGAGACTCGGGAGGATACTGAGTTGGGCACGTGTGGAGAGGGGCTCAGGGAGGCAAGCGTGCGACGGTTGCGGTGGGGCCAGGT TTGTGCCGTGCTTGGAATGTGGCGGGAGTTGTAAGGTGTTTGTTGACGGAGTTAATAAAGGGAGGTGTGGCAAGTGTAACGAGAATGGACTTGTTCATTG CCCGGGCTGTCATTAG
AA sequence Show only first row Show all	>Lus10003194 pacid=23155737 polypeptide=Lus10003194 locus=Lus10003194.g ID=Lus10003194.BGIv1.0 annot-version=v1.0 MGCASSKRIEAAVDIYRPPPSSFAVFDVASIQEPWLSSADESQLEKPPPSSDNNVPPPPLLHKLNKLESAADDAPRSWDEVSKELEDLKPTIKPISAAAV NPPPSKSPVHPPPMKREPRRSFSFHTLEELDSKSTPAKPKMRKSESARSLVNLKKSSSAVTESSFAVKSPSADTAVVKPVRGNIFILRDRMEREKDGKAD YVVRRGPLDDFPENCPPGGSDAVVVYTTSLRGVRKTYNACTRVLSLMELQSVATDERDVSLHAEFLTELRELVGEETESSLSLPRVFIKGRYVGGVEEVE ALNESGRLGRILSWARVERGSGRQACDGCGGARFVPCLECGGSCKVFVDGVNKGRCGKCNENGLVHCPGCH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64500			Glutaredoxin family protein (....		Lus10003194 [exp]	0	1
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	1.0	0.9444
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	2.4	0.9184
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	4.9	0.9203
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	5.0	0.8969
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	6.3	0.8916
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10017961 [exp]	9.0	0.8850
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	9.4	0.8687
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	9.6	0.8987
AT3G47070			unknown protein		Lus10040689 [exp]	10.4	0.8940
AT4G29110			unknown protein		Lus10014153 [exp]	11.0	0.8772

Compare expression of checked genes

Lus10003194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.