Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46290 684 / 0 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 455 / 2e-156 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT2G04540 261 / 6e-82 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001814 [exp] 865 / 0 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10025390 [exp] 679 / 0 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10040883 [exp] 678 / 0 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10015267 [exp] 645 / 0 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10004935 [exp] 513 / 0 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10034886 [exp] 477 / 1e-164 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10033422 [exp] 437 / 2e-150 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10014622 [exp] 262 / 3e-82 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 248 / 4e-76 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088700 [exp] 798 / 0 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 775 / 0 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.011G079700 [exp] 688 / 0 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 684 / 0 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.006G138000 [exp] 480 / 4e-166 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.018G062900 [exp] 464 / 1e-159 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.002G219500 [exp] 252 / 4e-78 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00109 [flax] [poplar] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [flax] [poplar] Thiolase PF02801 [flax] [poplar] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003195 pacid=23155753 polypeptide=Lus10003195 locus=Lus10003195.g ID=Lus10003195.BGIv1.0 annot-version=v1.0 ATGGCCAGCATTGCTTTTGGTTCTTGTTCACACATCAGCACCAGAGATGTCGGAGCACCTTCCTTGTCCCAATTCAATGGCTTCCGACCCGTCGAATCCG TTCAATTGCCGGCTTCCCCTGCTTTCCTCTCTTCTTCTTCAGGTAAAAGGTCGAGAAGATCGGCGGTGAGAGCGATGGCGGTGTCGGCGCCGGAAAGAGA GAAAGATCCAAAGAAGAGAGTGGTGATTACGGGAATGGGATTGGTCTCTGTTTTTGGGAACGACATTGACACGTTCTACAACAGGCTGCTGGCAGGGGAG AGCGGGATCAGCCTTATTGACCGGTTCGATGCATCCACTTTCTCCGTCCGATTCGCAGGCCAGATTCGCGATTTCTCTTCCACGGGATATATCGACGGCA AGAACGACCGTCGCCTTGATGACTGCTGGCGTTACTGCCTCGTCGCCGGGAAACGCGCCCTCGAAGACGCCAGCCTCGGCCCCCAAGTCCTCGAAACTAT GGACAAGACGAGGATTGGGGTGGTGGTGGGAACAGGGATGGGAGGGCTGACGGCGTTCAGCAGTGGAGTGGAGTCACTTCTGACGAAGGGATACAAGAAA ATCTCACCGTTTTTCATCCCTTACTCCATTACCAACATGGGTTCAGCTCTGCTAGCGATCGACACTGGACTAATGGGTCCGAATTACTCCATCTCGACGG CTTGTGCAACTGCCAACTACTGCTTCTACGCAGCTGCAAATCACATCAGAAGAGGGGAGGCGGATATCATTGTCGCCGGAGGCACGGAGGCGGCCGTCAT GCCCACCGGAGTGGGAGGGTTCATTGCCTGTAGAGCGCTCTCTCAGAGGAATGAGGACCCCACGAGAGCTTCAAGGCCTTGGGATAAGGACCGCGATGGC TTTGTCATGGGAGAGGGCTCTGGTGTCCTGGTTATGGAGAGCTTGGACCACGCGATGAAAAGAGGAGCAAACATAATAGCAGAGTACTTGGGCGGAGCAG TGACATGCGATGCTCATCATATGACTGATCCCAGGAAAGACGGGCTTGGTGTTTCTTCCTGCATCGCCAAGAGCTTGGAGGATGCTAAAGTCTCTCCTGA AGAGGTCAACTATGTGAATGCTCATGCAACATCCACGCTAGCAGGGGATCTGGCCGAGGTCAACGCCATCAAGAAGGTGTTCAAGAACACTTCCGAGATG AAGATGAACGGAACTAAGTCGATGATCGGGCACGGCCTCGGAGCTTCCGGCGGGCTCGAAGCTATCGCCACCATCAAGGCAATCACAACTGGGTGGTTGC ATCCAACCATCAACCAAGATAACTTGGAGGCTGATGTTACAATCGACACGGTTCCAAATGTGAAGAAGCAGCATCAAGTCAATGTTGCTATCTCTAATTC ATTTGGGTTTGGTGGGCACAATTCTGTGGTGGTTTTTGCTCCATTCTCTGCCTAA
AA sequence Show only first row Show all	>Lus10003195 pacid=23155753 polypeptide=Lus10003195 locus=Lus10003195.g ID=Lus10003195.BGIv1.0 annot-version=v1.0 MASIAFGSCSHISTRDVGAPSLSQFNGFRPVESVQLPASPAFLSSSSGKRSRRSAVRAMAVSAPEREKDPKKRVVITGMGLVSVFGNDIDTFYNRLLAGE SGISLIDRFDASTFSVRFAGQIRDFSSTGYIDGKNDRRLDDCWRYCLVAGKRALEDASLGPQVLETMDKTRIGVVVGTGMGGLTAFSSGVESLLTKGYKK ISPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIIVAGGTEAAVMPTGVGGFIACRALSQRNEDPTRASRPWDKDRDG FVMGEGSGVLVMESLDHAMKRGANIIAEYLGGAVTCDAHHMTDPRKDGLGVSSCIAKSLEDAKVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKNTSEM KMNGTKSMIGHGLGASGGLEAIATIKAITTGWLHPTINQDNLEADVTIDTVPNVKKQHQVNVAISNSFGFGGHNSVVVFAPFSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	3.6	0.8779
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	4.0	0.8730
AT1G21590			Protein kinase protein with ad...		Lus10023981 [exp]	4.1	0.7989
AT3G52740			unknown protein		Lus10022717 [exp]	4.2	0.8644
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002192 [exp]	4.7	0.8099
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10026433 [exp]	4.9	0.8332
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	4.9	0.8128
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	6.0	0.8559
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	8.9	0.8492
AT1G72880			Survival protein SurE-like pho...		Lus10037627 [exp]	9.2	0.7687

Compare expression of checked genes

Lus10003195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.