Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23990 754 / 0 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24000 729 / 0 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G24010 726 / 0 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT1G55850 427 / 7e-139 ATCSLE1 cellulose synthase like E1 (.1) AT2G32530 306 / 1e-92 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32540 298 / 1e-89 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32620 292 / 1e-87 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT4G38190 292 / 6e-85 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT4G15290 285 / 1e-84 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32610 275 / 5e-81 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032415 [exp] 993 / 0 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 993 / 0 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 688 / 0 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10016625 [exp] 443 / 9e-145 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10002134 [exp] 310 / 7e-92 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10029245 [exp] 234 / 5e-65 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10007296 [exp] 234 / 7e-65 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10039607 [exp] 228 / 9e-63 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 228 / 1e-62 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142500 [exp] 837 / 0 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142400 [exp] 833 / 0 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.001G369100 [exp] 457 / 2e-150 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.006G004300 [exp] 445 / 5e-146 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.010G074800 [exp] 408 / 2e-131 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.010G074700 [exp] 400 / 1e-128 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.002G227300 [exp] 349 / 8e-109 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 327 / 1e-100 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.009G170000 [exp] 295 / 6e-86 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 290 / 2e-84 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10003196 pacid=23155742 polypeptide=Lus10003196 locus=Lus10003196.g ID=Lus10003196.BGIv1.0 annot-version=v1.0 ATGGACGACCAAATCAGCCGCCGCCCCCGCAAGCCCGCCGGCGCCGCCGGAGCCACTCTCCACACGGCCAAATCATGGCCCTTCACTCCCTTCAGCCGTA TCTTCGCACCAATCAACCTCCTCGCCATCCTAGCCCTCTTCTACCACCACATAACAAACCTCTTCCTCTCCCTATCATCCACTCCATCTGTCACGTCGTC ACGGCCGCCGCCCTTCTTCTTCACAACCCTGGCGATGCTCCTCGCCGACGTCGTCCTCGCCTTCATGTGGGCCACCACTCAAGCCTTGCGGATGAACCCA ATACGGCGCCGTGAGATGGTGGACAACTTCGAGGATCAGCTGGTCGCCGTCGGTGGTCGGAACACTGAACTCCCCCGGCTGGATGTGTTCATATGTACGG CGGATCCTTACAAGGAGCCGCCGATCAGGGTGGTGAACACCGCCCTGTCGGTGATGGCGTACGAGTACCCGAGGGATAAGCTGTCGGTGTACGTGTCCGA CGACGGTGGCTCCGCCGTGACTCTGTTTTCGTTGATGGAGGCGGCCAAGTTTGCCAGCCGGTGGCTGCCGTTCTGCGATAAGAACACGGTGGTGGAGCGG AATCCGGACGTGTATTTTCAGCCCGGTCATCATCCGCCGTCTGACATCTCCGCCGAAGAGGAGTATATCAAGAGCATGTACGAGAGCATGAAAGCAAAGG TGGAAGACGTGCTAGAGCGAGGCAAAGTCGACGACCACTACATCAATGGACCCCAAGAGAAGGAAGCTTTCAGCAAATGGACAACTGAGTCTGATTTCAC CAAGCACGACCATCCAACTGTGATACAGGTTTTGTTGGAGAGCCGTACAGACGAGGATATTGATGGCCGCTTGATGCCAAACCTCGTCTACGTCTCGAGG CAGAAAAGCAAGACTTCTCCACATCATTTCAAAGCTGGCGCCCTCAATGCTTTGCTACGTGTGTCAGCAACGATGACAAACGCGCCAATAGTGTTGACCT TGGACTGCGACATGTACTCCAACGACCCCAAGACACCCATCCGCGCAATGTGCTACTTTTGCGACCCGAACCTCGGACCCGAAAACTCGGCCTATCTTCA GTTCCCTCAGAGCTACCATGGGATCAACAAGAACGACATCTACGCCGGCGAATTTCAACGCTTGTTCCGAATTCAAGCGATGGGATTCGATGGACTGTGT GGGCCCAACCATGTTGGAACTGGATGCTTCTTCCGTCGACGGGCTTTTTTTGGTGGTCCGTCCAGTTTCGTCCCACCTGACACCCCCGAGGTGGGACCGA ACCATGTACCAGCGGTGGACAAGCTGTCTATTCGGTCGGAGTCGGTTTTGGAGTTTGCCGATAAGGTTGCTGGTTGTACCTACGAAAACGACACCAATTG GGGCTACAAGATAGGATACAGGTATGGGTCATTGATTGAAGACATGTTCACAGGATACACCTTACACTGTGAAGGGTGGAGGTCGATTTTTTGTTGCCCC GAGAGATCCGCATTTCTTGGGGATGCACCAATCTCAGTGGTGGATATGCTGACTCAGCAGAAGCGATGGGCAATTGGGGTTCTCGAGGTGGGCTTTTCTA AATATAGTGCCTTAACCTATGGCATCAAGAATGCGGGCCTTCTCACGGGCTTGGGATATTGTCAGTACTCATTCTGGCCCATTTGGGCCATCCCACTCAC CATCTACGCTTTCCTCCCTCCAGTAGCTCTCCTCAACCACGTCCACATCTTCCCTAAGGCAACGGAAGCATATTTTTGGGTGTACCTGTTTCTATTCGTA GCCGCCTACGTCCAGGACTTGGTCGACTTCCTCTACGTGGGAGGAACCGCCGGCAAATGGTGGTCCGACCAAAGAATCTGGCTGCTACGTGGGCTGACGT GTCACCTATTCGGAACAACCGAGTACTTCCTCAAATTCCTAGGAATCTCCGCGGATTTCAACGTGACGAGCAAAGTGATCGACGAGGAACAGAGCAAAAG ATACGATCAGGGGATATTCGAGTTCGGAGTCCACAACCCGATGTTCATTCCCCCTACGGTGGCGGCTCTGATCAACTTGCTGGCATTACTTCATGGCCTG ACCGGCGTTATCCGCGGGGGCGGAGGTGACGGAATCGCTCAGGCGCCGCTTTTGCAACTGTTTATGGCCGGGTTTGCGGTGGTGAATTTTTGGCCCGTGT ATGAAGCTGTGGCTTTGAGAAGTGACGATGGGAGAATGCCGGTTAAGACCACTGTTTTGTCTGTTGGTTTGGCTTTGGTTACATATGTTGTCACATGTCA GTTGTTTTAG
AA sequence Show only first row Show all	>Lus10003196 pacid=23155742 polypeptide=Lus10003196 locus=Lus10003196.g ID=Lus10003196.BGIv1.0 annot-version=v1.0 MDDQISRRPRKPAGAAGATLHTAKSWPFTPFSRIFAPINLLAILALFYHHITNLFLSLSSTPSVTSSRPPPFFFTTLAMLLADVVLAFMWATTQALRMNP IRRREMVDNFEDQLVAVGGRNTELPRLDVFICTADPYKEPPIRVVNTALSVMAYEYPRDKLSVYVSDDGGSAVTLFSLMEAAKFASRWLPFCDKNTVVER NPDVYFQPGHHPPSDISAEEEYIKSMYESMKAKVEDVLERGKVDDHYINGPQEKEAFSKWTTESDFTKHDHPTVIQVLLESRTDEDIDGRLMPNLVYVSR QKSKTSPHHFKAGALNALLRVSATMTNAPIVLTLDCDMYSNDPKTPIRAMCYFCDPNLGPENSAYLQFPQSYHGINKNDIYAGEFQRLFRIQAMGFDGLC GPNHVGTGCFFRRRAFFGGPSSFVPPDTPEVGPNHVPAVDKLSIRSESVLEFADKVAGCTYENDTNWGYKIGYRYGSLIEDMFTGYTLHCEGWRSIFCCP ERSAFLGDAPISVVDMLTQQKRWAIGVLEVGFSKYSALTYGIKNAGLLTGLGYCQYSFWPIWAIPLTIYAFLPPVALLNHVHIFPKATEAYFWVYLFLFV AAYVQDLVDFLYVGGTAGKWWSDQRIWLLRGLTCHLFGTTEYFLKFLGISADFNVTSKVIDEEQSKRYDQGIFEFGVHNPMFIPPTVAALINLLALLHGL TGVIRGGGGDGIAQAPLLQLFMAGFAVVNFWPVYEAVALRSDDGRMPVKTTVLSVGLALVTYVVTCQLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	2.0	0.8824
					Lus10039654 [exp]	2.2	0.7984
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	2.6	0.7909
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	3.5	0.8211
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	7.9	0.7703
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	8.8	0.7822
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031817 [exp]	8.8	0.8170
AT1G71140			MATE efflux family protein (.1...		Lus10018136 [exp]	11.5	0.6962
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	14.3	0.7741
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	14.7	0.7957

Compare expression of checked genes

Lus10003196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.