Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64520 335 / 8e-116 RPN12A regulatory particle non-ATPase 12A (.1) AT5G42040 206 / 1e-65 RPN12B regulatory particle non-ATPase 12B (.1) AT5G20165 140 / 3e-42 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001813 [exp] 356 / 2e-125 AT1G64520 283 / 2e-97 regulatory particle non-ATPase 12A (.1) Lus10032420 [exp] 316 / 8e-109 AT1G64520 340 / 2e-119 regulatory particle non-ATPase 12A (.1) Lus10023053 [exp] 316 / 8e-109 AT1G64520 339 / 6e-119 regulatory particle non-ATPase 12A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142700 [exp] 359 / 3e-125 AT1G64520 427 / 5e-153 regulatory particle non-ATPase 12A (.1) Potri.001G088200 [exp] 355 / 5e-124 AT1G64520 414 / 5e-148 regulatory particle non-ATPase 12A (.1) Potri.008G176801 [exp] 132 / 4e-39 AT5G20165 128 / 4e-41 unknown protein Potri.010G058300 [exp] 132 / 4e-39 AT5G20165 128 / 4e-41 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family CL0123 [flax] [poplar] PF06842 [flax] [poplar] DUF1242 Protein of unknown function (DUF1242)
Representative CDS sequence Show only first row Show all	>Lus10003197 pacid=23155738 polypeptide=Lus10003197 locus=Lus10003197.g ID=Lus10003197.BGIv1.0 annot-version=v1.0 ATGGATCCAAAGCTGACGGAGGTTTCTCAGTACTTCGAGCGATTCAAAGCTGCTTGTGTGAGGGGGGATATCGACTCATCGGCCAATTTTCTTTCCCAGC TCAAGGTCTCACTGACCAGCTTCCGAAGCCTTCCGCCTTTGTTTGAAAATACGCCAAATGCTGTCCAAGAATTGACTATAGCGAGAGATATATATGAGCA TGCGGTTCTTCTAAGTGTGAAGATGGAGGATCAAGATGCTTTTGAAAGAGACTTCTTTCAGTTGAAGCCATATTATACTGACGCCCGTAGCCGTCTCCCT CCATCTCCTCAAGAACATATGATATTGGGTCTCAACTTGTTGAGGCTCTTAGTTCAGAACAGAATTGCCGAATTCCACACCGAGCTGGAACTGCTCCCGT CCAATTTTCTAGAGGATCCTTGCATCAAGCACGCTGTGGAGTTGGAGCAGTCATTCATGGAAGGGGCATACAACAGGGTGTTGAGTGCAAAACAATCTGT CCCGAACAAGAGCTATGACTACTTCATGGATGTTTTGGCTAAAACAGTCAGGGATGAAATAGCTGGATGCAGCGAGAAGGCGTACGACCATCTCTCAATC GACGATGCTCAACAAATCCTGCTCTTTTCTTCGGAAAAGGAGCTTCTGCAGTACATCAAGGAGGTCTTTGATCTAATATTCTCTTTTCCGCTTAAGGCAA GGAAATCATTGGCAATCACGAACATGTCGGCGCTTTTCAATTTCCATTCGTTTCTGACGGTGGTGTTGCTGGTGATCTGCACTTGCACTTTCTTGAAGAT GCAATTCCCCACCATCCTCGAACAGAAAACCGGGTTCCGTGGATTCTTCTGGAAAGCTGCCAGGATTGGTGAGCGGTTAAGCCCCTGGGTTGCTGCAGGG TCCCTGATGATGGGGGTATCCATCATATTCTTCTGA
AA sequence Show only first row Show all	>Lus10003197 pacid=23155738 polypeptide=Lus10003197 locus=Lus10003197.g ID=Lus10003197.BGIv1.0 annot-version=v1.0 MDPKLTEVSQYFERFKAACVRGDIDSSANFLSQLKVSLTSFRSLPPLFENTPNAVQELTIARDIYEHAVLLSVKMEDQDAFERDFFQLKPYYTDARSRLP PSPQEHMILGLNLLRLLVQNRIAEFHTELELLPSNFLEDPCIKHAVELEQSFMEGAYNRVLSAKQSVPNKSYDYFMDVLAKTVRDEIAGCSEKAYDHLSI DDAQQILLFSSEKELLQYIKEVFDLIFSFPLKARKSLAITNMSALFNFHSFLTVVLLVICTCTFLKMQFPTILEQKTGFRGFFWKAARIGERLSPWVAAG SLMMGVSIIFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10003197 [exp]	0	1
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	7.9	0.8011
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	56.6	0.7326
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	80.4	0.7048
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10007152 [exp]	88.8	0.7186
AT4G18100			Ribosomal protein L32e (.1)		Lus10007541 [exp]	98.6	0.7140
AT5G41770			crooked neck protein, putative...		Lus10041477 [exp]	128.4	0.7024
AT2G15730			P-loop containing nucleoside t...		Lus10027910 [exp]	129.6	0.6947
AT2G40435			unknown protein		Lus10009089 [exp]	147.2	0.6615
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	183.2	0.6908
AT2G35010		ATO1	thioredoxin O1 (.1.2)		Lus10016544 [exp]	253.7	0.6611

Compare expression of checked genes

Lus10003197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.