Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10890 92 / 8e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001812 [exp] 735 / 0 AT4G10890 105 / 6e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G058050 [exp] 282 / 5e-89 AT4G10890 105 / 6e-24 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10382 [flax] [poplar] DUF2439 Protein of unknown function (DUF2439)
Representative CDS sequence Show only first row Show all	>Lus10003198 pacid=23155747 polypeptide=Lus10003198 locus=Lus10003198.g ID=Lus10003198.BGIv1.0 annot-version=v1.0 ATGGAGGCGATCGGGAGGAAGAAGAATCGATGGTGCGTCACTTATACCCAGCACATTAAGCAGAAGAGGAAAGTTTATCAGCACGGTTTCTTAGATCACC TCATCGTCACCAACAAGGTTGTGCTGTTCGATGAATCTGAAAAGCTACTCGAATGCAAAGTACTCAAGGACGAAGATACCGTCAGCTCCGGGGAGTCGCT AACTTTCCATTCTTATCTGGTCGATGTCGGAGATCGGGAAGGTGCTCATGCGCCGGTTCCGGGGAGGGATAAGAAGAAGCAGGAGCGAGTACCTGGTTTA GTGCATCGCCAGAAGTTCAGAAGTCCTTCAATTAGTTCCGAGTTCAGGAAGTCTGAGCTGCAAAAGTACGAGGCACCGAAGAATGCTGAAAATACGATTA AATTTGTTCAAACAGAGTGGCAGGTCTTGTATACTACTCAAGTTTCGAAAAAGGCCAAGACGTATCATGATGGCTTCTTGCGGGTAGCTAACTGTGGATC CCTTCAGAGACAGATTATGCTGTGTGATACGAGCAGGAAACTGTTGACTAGCAGATTTCTTAAGAAAGATGAAGTAGTAGCATCTGGTGGATCACTGTCA ATGGATGGGCATTTAGTTGACATTGGTGAGGCTGTGGAAGATCGTTCGCCTCTAGTGAATGTGTCTGACGACCAAAGGGAGTGCTATGCTAATAAGAATA CCAAAATGATGCATCAAGGACAGAATTGTTCTAAACGCAACCCCATTTATGTAGAAGACGTTGAAGGTAGTGATGGTCAGAAGCTTGAAGAGGATGTGTC GAGTGCAAATCAAAAATGGGAGGTTATGTACACTTCACAAATGACTCAAAAGGCCAAAAAGTACCATGATGGATATTTGAAACTCGAAACCCGTGGATCG CTTGGGAGGCAGGTCAAGCTGTACGATGCAAGCTGTAATGTTTTAGAAAGCAGGCACCTCAAGAAAGATGAACGAATAAGTTCCGGAGGATCAATAGCAT TTGGTGCCCATCTGGTTGATGTTGGAGAGCTTAAAGGAGACAATCAACTTCCACAAGATTCAAATGCTCCAGGAAATGATTCCAATACTTTTCACAAGCC AGATAGAGTTCATAATGCTCGTCTTAGATCCAACAATTACGAGGCAAGTCGGCGACTGAACCCTTCTGACATTGCTTCTGTTCTCATAACAGGAAATTCA CAGGTTGATGATTTGCCAAAAAAAGTTGATTACAATTCAAGCAGCCTTATTGAATCAGAGAAGTTTGTTGAGACCGCCGTTGCTAAAAACCAACCCTTGC GTGATGCTTCTCAGATCTTGTCCATTCTTAAGAAACCCCCTCAGAAGAGCAATGCTGCAGGATGCATCAACGAGAACCAAAAGGCTCTGGTTTCCCCTAT TCAAGTACTTGAAGCTTCCCCTGATTGA
AA sequence Show only first row Show all	>Lus10003198 pacid=23155747 polypeptide=Lus10003198 locus=Lus10003198.g ID=Lus10003198.BGIv1.0 annot-version=v1.0 MEAIGRKKNRWCVTYTQHIKQKRKVYQHGFLDHLIVTNKVVLFDESEKLLECKVLKDEDTVSSGESLTFHSYLVDVGDREGAHAPVPGRDKKKQERVPGL VHRQKFRSPSISSEFRKSELQKYEAPKNAENTIKFVQTEWQVLYTTQVSKKAKTYHDGFLRVANCGSLQRQIMLCDTSRKLLTSRFLKKDEVVASGGSLS MDGHLVDIGEAVEDRSPLVNVSDDQRECYANKNTKMMHQGQNCSKRNPIYVEDVEGSDGQKLEEDVSSANQKWEVMYTSQMTQKAKKYHDGYLKLETRGS LGRQVKLYDASCNVLESRHLKKDERISSGGSIAFGAHLVDVGELKGDNQLPQDSNAPGNDSNTFHKPDRVHNARLRSNNYEASRRLNPSDIASVLITGNS QVDDLPKKVDYNSSSLIESEKFVETAVAKNQPLRDASQILSILKKPPQKSNAAGCINENQKALVSPIQVLEASPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10890			unknown protein		Lus10003198 [exp]	0	1
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	11.0	0.8496
AT1G71760			unknown protein		Lus10030260 [exp]	15.0	0.8535
AT1G61000			unknown protein		Lus10012690 [exp]	16.1	0.8173
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	24.4	0.7916
AT1G63640			P-loop nucleoside triphosphate...		Lus10024628 [exp]	27.6	0.8312
AT1G44760			Adenine nucleotide alpha hydro...		Lus10018190 [exp]	29.0	0.8417
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	29.8	0.8491
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10040855 [exp]	33.5	0.8061
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	36.2	0.8166
AT5G66440			unknown protein		Lus10014287 [exp]	41.1	0.7636

Compare expression of checked genes

Lus10003198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.