Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24020 926 / 0 NLP7 NIN like protein 7 (.1) AT1G64530 901 / 0 NLP6 Plant regulator RWP-RK family protein (.1) AT1G76350 424 / 1e-134 NLP5 Plant regulator RWP-RK family protein (.1) AT4G35270 392 / 8e-121 NLP2 Plant regulator RWP-RK family protein (.1) AT3G59580 385 / 8e-119 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 382 / 3e-117 NLP8 Plant regulator RWP-RK family protein (.1.2) AT2G17150 377 / 6e-116 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G20640 333 / 5e-100 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G38340 308 / 7e-92 NLP3 Plant regulator RWP-RK family protein (.1) AT4G35590 54 / 4e-07 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001811 [exp] 929 / 0 AT1G64530 590 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023049 [exp] 826 / 0 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10001810 [exp] 763 / 0 AT4G24020 319 / 6e-100 NIN like protein 7 (.1) Lus10016018 [exp] 424 / 7e-134 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 424 / 9e-134 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10032423 [exp] 392 / 8e-127 AT1G64530 323 / 6e-101 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 390 / 7e-122 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10008143 [exp] 392 / 5e-121 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 387 / 2e-119 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143000 [exp] 1165 / 0 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 1127 / 0 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 451 / 8e-144 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 429 / 3e-135 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 403 / 3e-125 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 400 / 4e-124 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.017G018500 [exp] 391 / 3e-120 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.016G042900 [exp] 389 / 5e-120 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 390 / 6e-120 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G166400 [exp] 382 / 2e-117 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10003199 pacid=23155766 polypeptide=Lus10003199 locus=Lus10003199.g ID=Lus10003199.BGIv1.0 annot-version=v1.0 ATGGGTGAGCAAGAAGATACTGCTGAGAAGTCAAAGCACCAAAACCATAGCCAGGAGCATGGTCAACAGCAGCACTCTGTTTTCATCACTTCCAGAGGAG ATTCATTGATGGAGATGGATCTTGATCTCGACAATCCATGGCCGTTGGATCAGATCTCCTTCGCTTCCAGTCATCCCATGTCTCCCCTTTTCCTCTCTTC AACCGATGCCCATCCCTGTTCCCCTCTTTGGACCTTCTCCGACGCCGACGAGCTCAAGCTTACTCCCTACTCCGCCACTCCGCCGCCCTCCGCCGCCCTC CGCGATTACCCAATCTTTGTCACATGCAATCTGAGCTCAACAACCAACAGAGAAATCGACGAGGGGAAGAAGATTCCTCCTCCTCCGTCTCCGCGGTGGG GATTCGCGCCAACGGAAAGCCCAGATGGATACAGCGTGATCAAAGAGAGGATGACTCGAGCTTTAAGATACCTGAAAGAGTCAACCGAGCAACACATTCT AGCTCAAGTTTGGGCGCCTGTGAAGAACGGTGGTCGATACGTTCTCACAACTTCAGAGCAGCCGTTCGTTCTCGATCCTCACTGCAACGGTCTAAATCAG TACAGGATGGTGTCCCTTCTGTACACTTTCTCCGTCGACGAAGAAATCGACGGAGAGCTCCACGGCCTACCGGGTAGGGTTTTCCAGCAGAAGTTGCCTG AATGGACTCCCAATGTGCAGTATTACTCTAGCAAGGAGTATCCACGGCTTGGTCATGCTTTGCACTATAATGTTCGAGGAACTCTTGCTTTGCCTGTTTT TGAAAAATCTGGGAAATCATGTGTTGGTGTGGTTGAGCTTGTTATGACTTCCCAGTTGGTCAATTATGCTCCTGAAGTTGATAAAGTCTGCAAGGCTCTT GAGGCTGTGAACCTGAAGAGTTCTGAAATATTGGACCATCCAAATCCACAGATATGCAATGAAGGTCGACAGAATGCACTCGCGGAGATTCTCGAGATAT TGACAGTTGTGTGTGAAGCTCACAAGCTGCCTCTAGCTCAAACTTGGGTTCCATGTATGCACCGCAGCGTTTTGGCTCATGGTGGCGGCCTCAAGAAGAG CTGTGCCAGCTTCGATGGAAGCTGTAACGGCCGAGTATGTATGTCAGTTACCGATTTAGCCTTCTATGTTGTGGATGCTCAAGTTTGGGGATTCAGGCAA GCTTGCCTTGAGCATCATTTGCAAACCGGCCAAGGTGTCGCTGGAAGGGCATTCTTGTCCCACAATGCTTGTTTCTGCAGAGACATTACCAACTTCTGCA AGACTCAGTACCCTCTAGTCCATTACGCTCGAATGTTCGGGTTACATGGATGCTTCTCCATCTGCTTGAAGAGCAGCCACACCGGAGATGACGATTACGT CCTTGAATTCTTTCTCCCTCCCGAGAATGAGGGGTTCGAACAGAAAAAGCTCTTGGGATCATTGCTAGCTACTATGAAGGAGCATTTCCAGAGTCTTAAG ATATCGTCCGGTATGGCCCTTAACGAGGAGGAAGGATTTGTCGAGATCATCGAAGCTTCGGAAGATGGGAAGCTTGATTACAGCCTTGAATGCGTTCGAG TCATACCACATTCTTTCCCAGATGTTGATCATGCGTTGCCAAATGAAATGGAGGTCGGGCAGCAATCTGTGGAGTTGAATGCCGTTGATAATGTCGAAAA AAGTTGTAGTGATGTTCATGTAGAAGGAAATAGTTGTACACCACCACCGCTTGAGAATGGAGCGAAGAATCCTCTGGTGAAGAAGAAGCGAGGCAAAACC GAAAAATCAATCAGTCTAGAGGTTCTCCAACAACATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGACTTGGCGTTTGCCCGACTACCATGAAGCGAA TCTGCAGGCAACACGGGATCTCTCGGTGGCCATCTCGCAAGATCAACAAGGTGAACAGATCCCTCACCAAGCTTAAAAGGGTGATTGAATCTGTTCAAGT TGCTGACAGGGCATTCGATTTAACCCCTCTGAATAATACATCGCCACTTCCTGTTGCCGTCAGTTCCATTTCCTGGCCTTCTGACATGAATGGATCCCAT AGAAATAGCAATGGCATACCCAGCTGTGAAATACCAGGAAATCTGGGTTCCCCGGAGGTGCGACAAAGTTCAAACAAGTCGAAATCCGGAAGCGTGTCGA GAGAAAACAGCGTTGGCAACTCTACATCTCACGGTTCATGTCAAGGAAGTCCAGCAAACGACAGCGCCCCTGCAAAGGACACATCTGACATTTCACCAGT TCATGATCCGTCCCCAAAACCACCCGTAGGATCACCTCCAGGCTTCATATTTGACGATCTCAAACTTTCTTCGGCAGCATACTCGATCCCAGATGCCCTG GTGGCTACAGAACCATTCGGAGAGATGCTAGTTGAAGATGCAGGAAGTTCCAAGGACTTGCGAAACCTTTGCCCATCAATCTTCGAAGACCGAGTTCCAG AGTCCAGCGGAACGAATCCTACACCTCTTCCGGCACTTGCCGTCCAACATTATCCAGTACCGGATCCAGCATCATGGCAAGAAGAAGCAAAGTGCTTGAT CATCAAGGCAATGTACAAGGAAGACATGATAAGGTTCAGAATTTCTCCCAGTTGCGGGATCATGGAGCTGAAGGAGGAGGTGGGGAAAAGGCTGAAGCTT GAAGTGGGTGTCTTCGACGTCAAGTATCTGGACGACGACAATGAATGGGTTCTGATCGTTTGCAATGCGGACCTACAAGAATGCATCGACATCACCAGGT CGTCGGGGAGTAGTATAGTCCGGCTGGCGATTCACGATGTCGCTGGGAATCTCGGCAGCTCCTGTGAAAGCACAGGTGGGGAGTTGAAGTAG
AA sequence Show only first row Show all	>Lus10003199 pacid=23155766 polypeptide=Lus10003199 locus=Lus10003199.g ID=Lus10003199.BGIv1.0 annot-version=v1.0 MGEQEDTAEKSKHQNHSQEHGQQQHSVFITSRGDSLMEMDLDLDNPWPLDQISFASSHPMSPLFLSSTDAHPCSPLWTFSDADELKLTPYSATPPPSAAL RDYPIFVTCNLSSTTNREIDEGKKIPPPPSPRWGFAPTESPDGYSVIKERMTRALRYLKESTEQHILAQVWAPVKNGGRYVLTTSEQPFVLDPHCNGLNQ YRMVSLLYTFSVDEEIDGELHGLPGRVFQQKLPEWTPNVQYYSSKEYPRLGHALHYNVRGTLALPVFEKSGKSCVGVVELVMTSQLVNYAPEVDKVCKAL EAVNLKSSEILDHPNPQICNEGRQNALAEILEILTVVCEAHKLPLAQTWVPCMHRSVLAHGGGLKKSCASFDGSCNGRVCMSVTDLAFYVVDAQVWGFRQ ACLEHHLQTGQGVAGRAFLSHNACFCRDITNFCKTQYPLVHYARMFGLHGCFSICLKSSHTGDDDYVLEFFLPPENEGFEQKKLLGSLLATMKEHFQSLK ISSGMALNEEEGFVEIIEASEDGKLDYSLECVRVIPHSFPDVDHALPNEMEVGQQSVELNAVDNVEKSCSDVHVEGNSCTPPPLENGAKNPLVKKKRGKT EKSISLEVLQQHFAGSLKDAAKRLGVCPTTMKRICRQHGISRWPSRKINKVNRSLTKLKRVIESVQVADRAFDLTPLNNTSPLPVAVSSISWPSDMNGSH RNSNGIPSCEIPGNLGSPEVRQSSNKSKSGSVSRENSVGNSTSHGSCQGSPANDSAPAKDTSDISPVHDPSPKPPVGSPPGFIFDDLKLSSAAYSIPDAL VATEPFGEMLVEDAGSSKDLRNLCPSIFEDRVPESSGTNPTPLPALAVQHYPVPDPASWQEEAKCLIIKAMYKEDMIRFRISPSCGIMELKEEVGKRLKL EVGVFDVKYLDDDNEWVLIVCNADLQECIDITRSSGSSIVRLAIHDVAGNLGSSCESTGGELK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10003199 [exp]	0	1
AT5G04980			DNAse I-like superfamily prote...		Lus10008934 [exp]	37.8	0.7396
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	51.3	0.7483
AT5G40890		ATCLCA, CLCA, A...	CHLORIDE CHANNEL-A, chloride c...		Lus10041568 [exp]	58.8	0.7054
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	80.7	0.7203
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	118.4	0.6819
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Lus10017447 [exp]	132.5	0.6937
AT5G10710			unknown protein		Lus10026945 [exp]	137.9	0.6915
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	167.5	0.6900
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	236.1	0.6738
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033483 [exp]	262.3	0.6713

Compare expression of checked genes

Lus10003199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.