Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10850 229 / 2e-75 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G62850 220 / 6e-72 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT1G66770 207 / 2e-66 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT3G28007 200 / 7e-64 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT5G40260 174 / 8e-54 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT1G21460 155 / 1e-46 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G53190 149 / 9e-44 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT4G15920 146 / 5e-43 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT5G50800 145 / 4e-42 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 139 / 5e-40 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017302 [exp] 418 / 1e-149 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10032426 [exp] 338 / 5e-118 AT4G10850 254 / 7e-85 Nodulin MtN3 family protein (.1) Lus10023047 [exp] 298 / 3e-102 AT4G10850 218 / 4e-71 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 218 / 9e-71 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 208 / 6e-67 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 207 / 2e-66 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10042131 [exp] 201 / 3e-64 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10022226 [exp] 176 / 9e-55 AT5G62850 223 / 4e-73 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10011990 [exp] 156 / 8e-47 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143100 [exp] 270 / 2e-91 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 211 / 2e-68 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 203 / 3e-65 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 159 / 3e-48 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 157 / 2e-47 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 156 / 6e-46 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 152 / 1e-44 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 150 / 2e-44 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 149 / 3e-44 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 146 / 5e-43 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10003200 pacid=23155740 polypeptide=Lus10003200 locus=Lus10003200.g ID=Lus10003200.BGIv1.0 annot-version=v1.0 ATGTCTCTTGACACTACCAGGACTGCGGTTGGCATCATCGGAAATGTCATCTCCTTATGCTTGTTTCTCTCCCCAGTGCCGACTTTCGTGCAAATATGGA AGAAAAGATCCGTGGAGCAGTTCAAACCCGACCCGTATCTCGCCACGCTACTCAACTGTATGGTCTGGGTGGTGTACGGTCTCCCGATCGTCCACCCAAA CAGCACGTTAGTGCTAACGATCAACGGCGCCGGCACTGTCATCCAGTTTGTCTACATAGCGCTCTACCTTGTCTACTCAGACAAGAAGAAGCGCGTAAAG GTCGGCGCCATCGTCCTTCTGGAGATCGCCTTCGTGGTGATTCTTTTCCTCCTCGTAGTCTTCTTCGTACGCCCGATCGAGAAGCGGTCCACCATTGTTG GTGTGCTCTGCGTCCTGTTCTGCCTCATGATCTATGTTGCTCCCCTCTCTGTCATGAAACTGGTGATCAAGACGAGAAGCGTGGAGTACATGCCATTCAC GCTGTCGCTCGCTTCCTTTGCGAACGGTGCTTGCTGGACCGCTTACGCCTTGATCCGAATCGACTGGTTCATCATGATACCAAATGGGTTAGGAGCCTTG CTGGCGGCGGGGCAGCTGGTTCTATACGCAACTTTCTACAAATCAACAAAGACGCAAATTGCAGAGAGGAATGCGGCGGAGAAAGGTGGATCTGCAGAGC TCACTCTGCCGCAGGTTGTCTTGGCTTTGGATGAACAAGTTGTTGCTAAGGCAGTGAATGTCGTCCACCATTGA
AA sequence Show only first row Show all	>Lus10003200 pacid=23155740 polypeptide=Lus10003200 locus=Lus10003200.g ID=Lus10003200.BGIv1.0 annot-version=v1.0 MSLDTTRTAVGIIGNVISLCLFLSPVPTFVQIWKKRSVEQFKPDPYLATLLNCMVWVVYGLPIVHPNSTLVLTINGAGTVIQFVYIALYLVYSDKKKRVK VGAIVLLEIAFVVILFLLVVFFVRPIEKRSTIVGVLCVLFCLMIYVAPLSVMKLVIKTRSVEYMPFTLSLASFANGACWTAYALIRIDWFIMIPNGLGAL LAAGQLVLYATFYKSTKTQIAERNAAEKGGSAELTLPQVVLALDEQVVAKAVNVVHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10003200 [exp]	0	1
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10017302 [exp]	1.0	0.8770
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009130 [exp]	1.4	0.8690
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027881 [exp]	6.9	0.6730
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	11.4	0.8045
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	14.5	0.7738
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	14.8	0.7984
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	15.9	0.7738
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	17.1	0.7738
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	18.3	0.7738
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	19.4	0.7738

Compare expression of checked genes

Lus10003200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.