Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10840 867 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G27960 610 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27500 597 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31240 147 / 3e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017304 [exp] 1121 / 0 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002376 [exp] 691 / 0 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 673 / 0 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022231 [exp] 580 / 0 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008786 [exp] 573 / 0 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033883 [exp] 130 / 9e-32 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 130 / 1e-31 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087800 [exp] 953 / 0 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G143200 [exp] 928 / 0 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G100400 [exp] 719 / 0 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G173400 [exp] 705 / 0 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G075300 [exp] 699 / 0 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080100 [exp] 682 / 0 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G094700 [exp] 660 / 0 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G222900 [exp] 172 / 5e-46 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G085200 [exp] 48 / 1e-05 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10003201 pacid=23155749 polypeptide=Lus10003201 locus=Lus10003201.g ID=Lus10003201.BGIv1.0 annot-version=v1.0 ATGCCGGGACTGGTCTCAGTCAAAACCCCTCCGGGAACCCCACAGCTCAGCGTCTCCGTCCCCATTTCCCAACCCCCAACCCGACCCGAATCCTCCTCCT CCCCTGTCCCAAGAACCCCCAACACCAGAAAACCCCCTTCCCCATCTCCATCCCGATCCAAGCTCTCCCCAGCCCGCTCCACCAAGAAACCCGCCCCGTC CGACTCACCAAACCCGCTCCTACAAGCCGATGCAGCGCTCGACAACCCGGATCTCGGCCCGTTCCTTCTCAAGCTCGCTCGTGACACGATTGCTTCAGGG GAAGGTCCTTCCAGAGCATTGGAGTACGCCATCCGAGCTTCCAAGTCGTTTGAGAGATGCGCCTCCGACGGGGAGCCCAGCTTGGACTTGGTCATGAGCT TGCACGTTCTCGGTGCGATCTACTGTAGCTTGGGGAAGTTCGAGGACTGTAGCTTGGGGAAGTTCGAGGAGGCGGTTCCTGTGCTTGAACGAGCCATCAC TGTTCCTGATTTGGGCCGAGGGATCGATCATGCCTTGGCGGCTTTTTCTGGGTATATGCAGCTTGGGGATACTTATTCGATGATTGGCCAGGTGGATAAG TCGATCTATTGCTATGAGGAAGGGTTGAAGATCCAGATCGAGTCCTTGGGGGATACGGATCCGAGAGTTGGAGAGACTTGCAGGTACTTAGCAGAAGCAC ATGTTCAAGCGATGAACTTTGAGAAAGCAGAGGAATTGAGCAAGAAAACCCTCGAAATTCATCGTGCCCACAGCGAGCCAGCGTCGATTGAAGAAGCAGC TGATCGGAGATTGATGGCGCTTGTGTATGAGGCGAAGGGAGATTACGAGGCGGCCCTCGAGCATCTCGTCCTCGCCAGCATGGCGATGATTGCGAACGGA CAGGATAACGAGGTTGCTGCTATCGATGTTAGCATCGGGAACACTTACATGTCCCTCTGTCGATTCGACGAGGCAGTCTTCTCGTACCAGAAGGCTCTCA CAGTGTTCAAGTCGTCGAAAGGCGACAACCACCCTTCGGTGGCTTCTGTGTTTGTACGCCTGGCGGATTTATACCACAGGACTGGAAAGCTCCGCGAGTC AAAGTCTTACTGCGAGAATGCTCTCAGGATCTATGCAAAACCCGTCCCTGGAACCACGGGAGAGGAGATCGCCGCTGGTTTGACTGAGATATCGGCCATT TACGAATCAGTGGATGAACCGGAGGAGGCATTGAAGCTTTTGCAGAAGGCGATGAAGTTGCTGGAGGACAAACCGGGACAGCAGAATACAATCGCAGGGA TCGAGGCAAGGATGGGGGTGATGTTTTACATGCTCGGTAGATACGAAGAAGCAAGGGGCTGTTTCGAGAGCGCGGTTGCTAAACTCAGAGCAAGCGGGGA GAGGAAATCGGCCTTCTTTGGTGTTGTTCTCAACCAGATGGGGTTGGCTTCTGTGCAGCTGTTCAAGATCGATGAAGCTGTGGAGTTGTTCGAAGAAGCG AGAGCGGTATTGGAGCAGGAATGCGGTCCGTGCCATCAGGATACTCTCGGAGTTTACAGCAATCTCGCTGCTACTTACGATGCCATGGGAAGGGTTGAGG ATGCAATAGAGATACTGGAGTACGTTCTCAAGCTGAGAGAAGAGAAGCTCGGTATCGCCAATCCGGATTTCGAAGACGAGAAGAACAGACTGGCGGAGCT TCTGAAAGAAGCAGGCAGGGCTAGGAACAAGAAGGCCAAGTCTCTGGAGAATCTGATCGACCCGAACTCGAAGAGGACAGCGTCTACGAAGAAAGAATCG TCGACCAGGAAATGGGGATTCAGGATTTGA
AA sequence Show only first row Show all	>Lus10003201 pacid=23155749 polypeptide=Lus10003201 locus=Lus10003201.g ID=Lus10003201.BGIv1.0 annot-version=v1.0 MPGLVSVKTPPGTPQLSVSVPISQPPTRPESSSSPVPRTPNTRKPPSPSPSRSKLSPARSTKKPAPSDSPNPLLQADAALDNPDLGPFLLKLARDTIASG EGPSRALEYAIRASKSFERCASDGEPSLDLVMSLHVLGAIYCSLGKFEDCSLGKFEEAVPVLERAITVPDLGRGIDHALAAFSGYMQLGDTYSMIGQVDK SIYCYEEGLKIQIESLGDTDPRVGETCRYLAEAHVQAMNFEKAEELSKKTLEIHRAHSEPASIEEAADRRLMALVYEAKGDYEAALEHLVLASMAMIANG QDNEVAAIDVSIGNTYMSLCRFDEAVFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAKPVPGTTGEEIAAGLTEISAI YESVDEPEEALKLLQKAMKLLEDKPGQQNTIAGIEARMGVMFYMLGRYEEARGCFESAVAKLRASGERKSAFFGVVLNQMGLASVQLFKIDEAVELFEEA RAVLEQECGPCHQDTLGVYSNLAATYDAMGRVEDAIEILEYVLKLREEKLGIANPDFEDEKNRLAELLKEAGRARNKKAKSLENLIDPNSKRTASTKKES STRKWGFRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	0	1
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	1.0	0.9533
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	1.4	0.9391
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10022785 [exp]	2.6	0.9223
AT4G33640			unknown protein		Lus10007087 [exp]	2.8	0.9301
AT1G72180			Leucine-rich receptor-like pro...		Lus10009476 [exp]	3.0	0.9379
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10032283 [exp]	3.5	0.9263
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10024651 [exp]	4.0	0.9203
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10010704 [exp]	6.8	0.8987
AT1G12500			Nucleotide-sugar transporter f...		Lus10006684 [exp]	7.7	0.9007
AT1G72180			Leucine-rich receptor-like pro...		Lus10003503 [exp]	7.7	0.9168

Compare expression of checked genes

Lus10003201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.