Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42020 1012 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 1011 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 880 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G09440 701 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 694 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 692 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02490 689 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 689 / 0 HSP70B heat shock protein 70B (.1) AT1G56410 658 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G09590 491 / 2e-166 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017306 [exp] 1096 / 0 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023043 [exp] 1058 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10032430 [exp] 835 / 0 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017022 [exp] 779 / 0 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10002319 [exp] 704 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 696 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10021345 [exp] 694 / 0 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10025333 [exp] 691 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 690 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087500 [exp] 1026 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 1026 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 988 / 0 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 859 / 0 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.010G205800 [exp] 699 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 697 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 694 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 694 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054600 [exp] 691 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 689 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10003202 pacid=23155765 polypeptide=Lus10003202 locus=Lus10003202.g ID=Lus10003202.BGIv1.0 annot-version=v1.0 ATGGCTGGCTCTCGAAGAGCATTTGGTCTCGTCGTCTCGGCAGTTCTCTTATTCGGTTGCCTATTTGCAATTTCCACAGCGAAAGAGGAAGAAGGCCCCA AGCTTGGAACCACTATTGGGATAGATCTTGGTACAACTTACTCTTGTGTCGGTGTATATAGGAATGGTCACGTGGAAATTATAGCCAATGACCAAGGAAA CCGTATCACCCCGTCCTGGGTTGCGTTTACTGATGGTGAGAGATTGATCGGTGAGGCTGCAAAGAACCAGGCAGCTGTGAACCCAGAGAGGACCATCTTT GATGTCAAGAGGCTTATTGGAAGAAAGTTTGAGGACAAAGAGGTCCAGAGGGATATGAAACTTGTCCCATACAAGATTGTGAACAAGGATGGGAAGCCTT ATATCCAGGTGAAGATCAAGGATGGTGAGACCAAGGTGTTCAGTCCTGAAGAGATCAGTGCAATGATTTTGACTAAGATGAAGGAAACAGCTGAGGCTTT CCTGGGAAAGAAGATCAAGGATGCAGTTGTCACCGTCCCTGCCTACTTCACTGATGCCCAGAGACAGGCCACCAAGGATGCCGGAGGCGAGAAGAACATT CTGGTCTTTGATCTTGGTGGCGGTACCTTTGATGTCAGTATCTTGACCATTGATGAAGGAGTTTTTGAGGTCCGTTCGACAAATGGCGACACTCATTTGG GAGGTGAGGACTTTGATCAAAGGATCATGGAGTACTTCATCAAGTTGATCAAGAAGAAGCACCAGAAGGACATCAGCAAAGACAACAGAGCTCTAGGAAA GCTCAGGAGGGAAGCTGAACGTGCCAAGAGAGCTCTGAGCAGCCAGCACCAATTCCGAGTCGAAATCGAATCACTTTTCGACGGAGTAGACTTCTCTGAA CCGCTCACCAGAGCTCGCTTCGAGGAATTGAACAACGATCTGTTCAGGAAGACCATGGCGCCTGTGAAGAAGGCCATGGAAGACGCTGGCTTGTCAAAGG ACAAGATCGACGAGATCGTCCTCGTCGGTGGAAGTACCAGAATCCCCAAGGTTCAACAGCTTCTGAAAGATTATTTCAACGGGAAAGAGCCCAGCAAGGG GGTCAACCCTGATGAGGCTGTTGCTCACGGTGCTGCCGTCCAGGGAGCCATTCTTAGCGGAGATGGTGGCGATGAAACCAAAGGCCTCCTTCTCCTGGAT GTCGCACCACTGACATTGGGTATTGAAACCGTCGGTGGAGTGATGACCAAGTTGATCCCCAGGAACACCGTTATCCCAACCAAGAAGTCTCAAGTTTTCA CTACCTACCAGGATCAACAGACCACCGTCTCCATTCAGGTGTTTGAAGGTGAAAGGAGTATGACCAAGGACAACAGGCAGCTTGGTAAATTCGACCTTAC TGGAATTCCTCCAGCTCCCAGGGGAACTCCACAAATCGAGGTGACATTTGAAGTGGACGCGAACGGAATCCTGAACGTGAAAGCGGAGGACAAGGCCTCC GGCAAGGCGGAGAAGATCACGATCACCAACGAGAAGGGACGTCTGAGCCAGGAAGAGATCGAACGGATGGTACGAGAAGGAGAAGAGTTCGCCGAGGAGG ACAGGAAGGTGAAGGAGAAGATCGACGCTCGTAACAGCCTGGAGACTTACGTGTACAACATGAAGAACCAGATCAACGACAGTGACAAGCTCGCCGACAA GTTAGAAGGAGACGAGAAGGAGAAGGTGGAAGCCGCCACTAAGGAGGCTTTGGACTGGCTTGACGAGAATCAGACGGCGGAGAAGGAGGAGTACGATGAG AAGTTGAAAGAAGTTGAAGCTGTGTGTAACCCGATCATTGCTGCTGTTTACCAGCGGTCCGGTGGGGCTCCCGGCGGCGGCGCGTCAGGTGGTGACGAGG ATGAATCACACGATGAACTGTAA
AA sequence Show only first row Show all	>Lus10003202 pacid=23155765 polypeptide=Lus10003202 locus=Lus10003202.g ID=Lus10003202.BGIv1.0 annot-version=v1.0 MAGSRRAFGLVVSAVLLFGCLFAISTAKEEEGPKLGTTIGIDLGTTYSCVGVYRNGHVEIIANDQGNRITPSWVAFTDGERLIGEAAKNQAAVNPERTIF DVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFTDAQRQATKDAGGEKNI LVFDLGGGTFDVSILTIDEGVFEVRSTNGDTHLGGEDFDQRIMEYFIKLIKKKHQKDISKDNRALGKLRREAERAKRALSSQHQFRVEIESLFDGVDFSE PLTRARFEELNNDLFRKTMAPVKKAMEDAGLSKDKIDEIVLVGGSTRIPKVQQLLKDYFNGKEPSKGVNPDEAVAHGAAVQGAILSGDGGDETKGLLLLD VAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDNRQLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKAS GKAEKITITNEKGRLSQEEIERMVREGEEFAEEDRKVKEKIDARNSLETYVYNMKNQINDSDKLADKLEGDEKEKVEAATKEALDWLDENQTAEKEEYDE KLKEVEAVCNPIIAAVYQRSGGAPGGGASGGDEDESHDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10003202 [exp]	0	1
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	9.3	0.6799
AT1G50660			unknown protein		Lus10002072 [exp]	9.6	0.6955
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10022182 [exp]	12.6	0.6221
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	13.2	0.6717
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	15.0	0.6596
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	16.5	0.6348
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	17.1	0.6377
					Lus10001343 [exp]	17.3	0.6672
AT5G15110			Pectate lyase family protein (...		Lus10013267 [exp]	18.2	0.5896
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10031393 [exp]	20.8	0.6190

Compare expression of checked genes

Lus10003202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.