Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55090 1273 / 0 carbon-nitrogen hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017307 [exp] 1456 / 0 AT1G55090 1306 / 0.0 carbon-nitrogen hydrolase family protein (.1) Lus10000200 [exp] 837 / 0 AT1G55090 732 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087400 [exp] 1317 / 0 AT1G55090 1274 / 0.0 carbon-nitrogen hydrolase family protein (.1) Potri.003G143700 [exp] 1296 / 0 AT1G55090 1291 / 0.0 carbon-nitrogen hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF02540 [flax] [poplar] NAD_synthase NAD synthase CL0039 [flax] [poplar] PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10003203 pacid=23155754 polypeptide=Lus10003203 locus=Lus10003203.g ID=Lus10003203.BGIv1.0 annot-version=v1.0 ATGAGGCTGCTGAAGCTAGCTACCTGCAACTTGAACCAATGGGCGATGGACTTCGACTCCAACTTAACCCACATAAAGGAGTCAATCACCAGAGCTAAAC AAGCCGGCGCCGTCATTCGCCTCGGTCCAGAGCTCGAGATAACCGGCTACGGCTGCGAGGATCACTTTCTCGAGCTCGACACCATCTCTCACTCATGGGA GTGCCTGAAGGAGATTCTGCTCGGAGATTGGACGGACGGGATACTCTGCAGTATCGGCATGCCAGTGATTAAAGGCTCGGAGCGTTACAACTGTCAAGTA ATGTGTATGAATCGGAAGATTCTCATGATCCGCCCCAAACTATGGCTCGCAAACGACGGCAATTACAGAGAGCTCAGATGGTTTACCGCATGGAAGCAAA GAGATCAGCTTCAGGAATTTCAGCTCCCTCCAGATATTTCAGATGACATTTCTCAGAAAACTGTTCCGTTTGGATACGGATTCATCCAATTTCAAGACAC AGCTGTTGCTGCTGAAGTTTGCGAGGAGCTCTTTACGCCAATTCCACCGCATGCCGAGCTAGCACTTAACGGCGTTGAAGTGTTTATGAACGCAAGTGGA AGCCATCACCAGCTGAGAAAGCTTGATGTCCGTCTCCAAGCTTTCATGGGAGCTACTCATACTCGCGGAGGAGTGTATATGTACAGCAATCACCAAGGAT GCGATGGTGGACGTCTTTATTATGATGGATGCTCTTGCGTTGTTGTAAATGGAGAAGTTGTTGCTCAAGGTTCGCAGTTTTCGTTGAGAGATGTCGAGGT TGTGGTTGCTCAAGTTGATCTTGATGCGGTTGCTAGTCTAAGAGGATCCATAAGTAGTTTCCAAGAGCAAGCCAGTTGTAAAACCAGCGTTTCGTCTGTA GCAGCACCTTACAGTTTGTGTCAGCCTTTTAACTTGAAAATGATTCTCTCTAACCCCATGAAGATCAGCTATCACTGTCCTGAGGAGGAAATAGCATTCG GCCCCGGTTGCTGGCTTTGGGATTACTTGAGAAGAAGTGGAGCTTCTGGATTTTTGCTTCCTCTTTCTGGCGGAGCAGACAGCTCCTCAGTAGCAGCCAT AGTTGGTTGCATGTGCCAACTCGTTGTAAAAGACATTGCAAACGGGGATGAACAAGTTAAAGCTGACGCAATACGCATTGGACGCTACACTGATGGCCAG TTTCCCACTGACAGCAAAGAATTCGCAAGGCGTATATTTTACACGGTGTTTATGGGAACTGAAAATAGTTCTGATGCTACGAGAACCCGGGCAAAGGTGC TAGCAGATGAGATAGGTTCATGGCATCTTGATGTATCAATAGATGGGGTTATATCTGCATTACTTTCCTTGTTTCAAACCCTTACAGGAAAGCGACCACG CTATAAGGTAGATGGTGGTTCTAATAGTGAGAACCTAGGTCTCCAGAATATTCAAGCTCGGATCAGAATGGTACTAGCATTCATGTTAGCCTCACTGCTG CCATGGGTTCACAGTAAACCCGGATTCTATCTCGTTTTAGGTAGCTCGAACGTTGATGAAGGCTTGCGAGGTTATTTGACTAAGTATGATTGCAGCTCAG CAGATATAAATCCGATTGGCAGTATAAGCAAGCAGGACCTTCGGTCGTTTCTGCGATGGGCTGCTAAAGATCTCGGTTATTCATCCTTGGCGGAAATCGA AGCAGCTCCACCAACAGCTGAATTAGAGCCTATACGCTCAAACTATAGCCAGCTTGATGAAGTGGACATGGGAATGACATACGAGGAGCTCTCAGTCTAC GGTAGATTGCGAAAGATTTTCCGCTGCGGACCAGTTTCGATGTTCAAGAATCTTTGCTACAAATGGGGATCAACTTCAACCCCATTAGAAGTGGCGGACA AAGTGAAACACTTCTTCAAGTACTACTCCATTAATCGACACAAGATGACTGTCTTAACTCCATCATACCATGCCGAGAGTTATTCGCCAGAGGACAACAG GTTCGACCTCCGCCAATTCCTCTACAACGCGAGGTGGCCATATCAATTCCGGAAAATCGACCAGCTTGTCGAGGAACTAAACGGCGACAAAGTTGCCTTT GAAGGGAAGCCGGTAGGAATGGGAGTAGTTGGTGCAAGCTCTGGAGATCCCAAAGCTGGGTTTTAA
AA sequence Show only first row Show all	>Lus10003203 pacid=23155754 polypeptide=Lus10003203 locus=Lus10003203.g ID=Lus10003203.BGIv1.0 annot-version=v1.0 MRLLKLATCNLNQWAMDFDSNLTHIKESITRAKQAGAVIRLGPELEITGYGCEDHFLELDTISHSWECLKEILLGDWTDGILCSIGMPVIKGSERYNCQV MCMNRKILMIRPKLWLANDGNYRELRWFTAWKQRDQLQEFQLPPDISDDISQKTVPFGYGFIQFQDTAVAAEVCEELFTPIPPHAELALNGVEVFMNASG SHHQLRKLDVRLQAFMGATHTRGGVYMYSNHQGCDGGRLYYDGCSCVVVNGEVVAQGSQFSLRDVEVVVAQVDLDAVASLRGSISSFQEQASCKTSVSSV AAPYSLCQPFNLKMILSNPMKISYHCPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKDIANGDEQVKADAIRIGRYTDGQ FPTDSKEFARRIFYTVFMGTENSSDATRTRAKVLADEIGSWHLDVSIDGVISALLSLFQTLTGKRPRYKVDGGSNSENLGLQNIQARIRMVLAFMLASLL PWVHSKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRSFLRWAAKDLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVY GRLRKIFRCGPVSMFKNLCYKWGSTSTPLEVADKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFRKIDQLVEELNGDKVAF EGKPVGMGVVGASSGDPKAGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10003203 [exp]	0	1
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10027658 [exp]	2.6	0.8295
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	5.0	0.7598
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	6.3	0.7887
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	7.4	0.7343
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	10.4	0.8108
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10042575 [exp]	12.0	0.7417
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	13.7	0.7579
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10034723 [exp]	15.1	0.7316
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10011805 [exp]	18.5	0.7937
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	23.6	0.7303

Compare expression of checked genes

Lus10003203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.