Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64600 623 / 0 methyltransferases;copper ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017309 [exp] 933 / 0 AT1G64600 635 / 0.0 methyltransferases;copper ion binding (.1) Lus10017311 [exp] 174 / 3e-52 AT1G64600 141 / 1e-40 methyltransferases;copper ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086800 [exp] 642 / 0 AT1G64600 642 / 0.0 methyltransferases;copper ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF09243 [flax] [poplar] Rsm22 Mitochondrial small ribosomal subunit Rsm22
Representative CDS sequence Show only first row Show all	>Lus10003205 pacid=23155746 polypeptide=Lus10003205 locus=Lus10003205.g ID=Lus10003205.BGIv1.0 annot-version=v1.0 ATGGCGAACCTCCTCCCGGAAACAACCAAGCTGGCCTTCTCACACGAAGCACTCCGATCCGCCGCCAGACTATCGGAAGGATGCCTCGTCGTCTCTGTCC GCCTCCGCCGTGCCATCAAAAGATACCTCCGGGAACTGGAGGAGCCGCACATAAAGAAAAAGGTGATGCAGCTCTCTCAATCCTTCAACGAGATCAAGGA CGCCAACTTAATGCTCACTGCCAATACTTCGAAAGAGCTCGTTGAGGATCCTTTCAAATCGATGGAGAACTCTCAGCGCTGGAAAATCAGAAGCGCTTAT GGAGACATCGGTCTTAAGTACTCCGATAATGAGACCGTCGCTTACGTGGCTTCTCGAATGCCTGCAGTTTTCTCCGCTTGCTACCGAGTTCTCAGCGAGG TAGGGAGAAGGTTGCCGGATTTTACTCCGTCTAAGGTGCTGGATTTCGGCGCTGGTACTGGTTCAGCTTTCTGGGCTATGAAAGAAGTGTGGCCAAAATC AATCAAGAATGTCAATTTGGTGGAACCTTCTCAATCAATGCAGCGTGCAGGCCGAAGCTTGATTCAAGGAATGAAGGATTTGCCACTTATTCATGGCTAT GAAAGCATTCAGGCATTAAGCAAAAACCTTAAGAAGTCTGAGAGAGAACATGACCTTGTAATTGCTTCGTATGTGCTTGGCGAGATACCTAACATGAAAG ATCGAATTACTACAGTCCGTCAGCTTTGGGATCTTACTAATGATGTTCTGGTTTTGATAGAACCAGGAACACCACAGGGTTCTAGCATCATATCTCAGAT GCGATCTCATATACTGTGGATGGAGAAAAGAAAACTTCGTAAATCACTGAAGAAAAATGTCGAGGCTTGCCAGGACTTGGTTCCAGTCAAAAGTGGAGTC TTTGTAGTTGCCCCTTGTTCGCATGATGGGCAGTGCCCTTTGGTGAAATCTGGAAAATACTGTCACTTTGTTCAGCGTTTGCAAAGAACAACATCGCAAC GAGCTTACAAGAGTTCAAAAGGTGGTGGACCTTTACGTGGTTTCGAGGACGAGAAATTCTCCTTCGTTGCCTTTAGACGAGGGCAGCGACCTAGGAAGCC ATGGCCTCTTGCTGGCGTGAAATTAGAAACTCAGAAAGAGCAGCGCGCTAACCGAAATCCAGAAGAACTCGAAATCGATTACGATGACTACGTGAAACAA TACGAAAATGAGGAGGATGATGATGATGATGGTGATGAACACGAAGAAGCAGACCGCATCAACTATGACTCGGATTTCATCGAAACAGACAATATTGATG ACGACGAAGAAGATGAAGAAGAAGAAAAGGAAGAAGTAGAGAGGATGGTTGAAGGAGAAGAAGAAAGAAGTGAAGCAGATGTTGGAGGAGGTTGGGGGAG GATTATATTCTCGCCGGTTCGAAGAGGGAAACTGGTTACGATGGATGTATGTAGATCAGCGAACGAGGAAGCATCGGAGGGATCATATGAACGTATCGTT GTGACGAAGAGTAAGAACCCAACGTTGCATCATCAAGCTCGCAAATCCCTGTGGGGTGATCTCTGGCCTTTCTGA
AA sequence Show only first row Show all	>Lus10003205 pacid=23155746 polypeptide=Lus10003205 locus=Lus10003205.g ID=Lus10003205.BGIv1.0 annot-version=v1.0 MANLLPETTKLAFSHEALRSAARLSEGCLVVSVRLRRAIKRYLRELEEPHIKKKVMQLSQSFNEIKDANLMLTANTSKELVEDPFKSMENSQRWKIRSAY GDIGLKYSDNETVAYVASRMPAVFSACYRVLSEVGRRLPDFTPSKVLDFGAGTGSAFWAMKEVWPKSIKNVNLVEPSQSMQRAGRSLIQGMKDLPLIHGY ESIQALSKNLKKSEREHDLVIASYVLGEIPNMKDRITTVRQLWDLTNDVLVLIEPGTPQGSSIISQMRSHILWMEKRKLRKSLKKNVEACQDLVPVKSGV FVVAPCSHDGQCPLVKSGKYCHFVQRLQRTTSQRAYKSSKGGGPLRGFEDEKFSFVAFRRGQRPRKPWPLAGVKLETQKEQRANRNPEELEIDYDDYVKQ YENEEDDDDDGDEHEEADRINYDSDFIETDNIDDDEEDEEEEKEEVERMVEGEEERSEADVGGGWGRIIFSPVRRGKLVTMDVCRSANEEASEGSYERIV VTKSKNPTLHHQARKSLWGDLWPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	0	1
AT1G60640			unknown protein		Lus10033578 [exp]	1.0	0.9121
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	5.5	0.8781
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	5.7	0.8799
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10026687 [exp]	12.6	0.8668
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	12.6	0.8911
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10008853 [exp]	14.9	0.8602
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	14.9	0.8873
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	19.4	0.8597
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	21.7	0.8407
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	26.0	0.8775

Compare expression of checked genes

Lus10003205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.