Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64610 399 / 8e-131 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 390 / 3e-127 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 389 / 4e-126 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 386 / 3e-125 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G54200 310 / 1e-94 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 302 / 4e-94 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 305 / 1e-92 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 243 / 1e-69 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 232 / 9e-66 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 90 / 2e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017312 [exp] 962 / 0 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 771 / 0 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 765 / 0 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020846 [exp] 316 / 3e-99 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011313 [exp] 298 / 3e-95 AT5G53500 129 / 1e-32 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 297 / 3e-92 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004966 [exp] 259 / 2e-83 AT5G54200 46 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022377 [exp] 266 / 2e-79 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024399 [exp] 263 / 2e-76 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144400 [exp] 557 / 0 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 552 / 0 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 431 / 8e-142 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 422 / 6e-139 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 402 / 9e-131 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 366 / 6e-118 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 358 / 5e-115 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 321 / 5e-98 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 312 / 2e-94 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 258 / 8e-75 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003206 pacid=23155739 polypeptide=Lus10003206 locus=Lus10003206.g ID=Lus10003206.BGIv1.0 annot-version=v1.0 ATGGGGTGTTCCACTGCAGAAGATAGATTCTTTGATTCTAGAGAAGAGTTGTTTCATTTGGCCGCCGCCGGCGGTGTTGGTAATATCCAGATTTGGACTG ACAAGAATCTCGACAGTGTCCAGGATCGGCGGCGCAGCTTCCTGACATGGATGAATCTGAGTTCTGATACGGTGTCGGATTCCGAAGCCCTGCAATCGGT GGTTGAAATTGATAACGGCGGCGGAATGTTTAGAAGTTGTGATTCGGAAGATGACGATGGGTTCTGTTCCGACAACACTAATTTGTCTCGCGCTACTTCT TGTCACTCAGCTGAAGCTCGGGAGTCCTTTCCGGATAAGGATTGCGTGTGCAAGATTCGAAATTTAGACGACGGGAGGGAGTTCGTCGTCGAAGAGCTGG ACCAAGACGGAATCTTTGGGAGATTCCGGGAAGTGGGCTCGACCAATCAATCCCTAACCTTGGAAGAGTTCCAGAGGAGCATCGGGTGGTCGCCTCTGAT TCAGCGGCTTCTCCGCAGAAGAAACAAATTGACAAGGAAGAAATCCAACAACAAGAAGGGTTGGCTCAGGAAGAAGAAAAAGCTTGGATCTTTACCAGAC AAACGTGAGTATAATGCTCTGCAGAAAGTGAAAGTTCATACACACAGGAAGAAGACAAAGCAGCTGTCTTCTGTCTTTACCGGACAGGAATTTCTGGCTC ATAAGGGATCTATACTTACGATGAAGTTTAGTCTTGATGGAAAATACTTGGCTAGTGGTGGTGAAGACGGTGTTGTTAAGGTGTGGCGGGCTGTTGAGGA TTATGATAGATTGGATCAGTTTGATGTCTCAAGTAGTGATGATGATCCTTCTTCATCAGAGTCAACTTGTGTTGTTTTTCCGGAAAAGGTGTTCAGGGTT CTAGAGAAGCCTATGCATGAGTTCAAGGGTCACTCCGGCGAGATTCTTGATCTCTCCTGGTCTAACCAGAAGTATCTCCTGTCGTCCTCTGATGATAACA CAGTGCGCCTATGGAAAGTGGGATGTGACAAATGCCTCAAGGTTTTTCATCATAAGAACTACGTAACGTGCGTTCAGTTCAATCCAGTGGATGAAGACTA CTTTATCAGTGGATCTATAGATGGAAAAGTTCGGATTTGGGAAGTGTCTGGATGTCAGGTTGTCAGCTATACCGACATCAGAGAAATCGTTACTGCTATC GCTTATCGTCCTGGTGGAGAGGGAGCTATTGTGGGCACAATGTCTGGGAGCTGTATTTTCTACGAGATCATAGACAATAAGATGAGACAAGATGCTGTAG TTTGTTCGCAAAGGAAAACAAAACTGCCTGGCAAGAGAATAACCAGCTTTGAGTTTTCTCTGAGCGATCCGAGTAGAGTGATCGTCACATCAGCTGATTC GCTTGTTCGAGTTCTTTGCAGCACCGATGTCATTTGCAAATTTCGAGTGTCACGCCTCCGGATTGCTACGAACCAGATGCACGCCACTTTCACCTCGGAT GGGAAGAGTGTTGTCTCAACGAGCGACGACTCGAATGTATACATATGGAACTACGACAAACAGGGAAAAAACCCGTCCTCTCGAGCTAAGCTTATCCGCT CCTATGAGAGCTTCGTTTCCCCAAATGCATCACTCGCAATACCTTGGCGTGGCATCGAAACTACTCCAGGTAGCACAATCTCGTCCTCACGATCGCAATC CGGCCATAACCATCACAAGAGTAGCATCATATCGTCGCCGGATTGTTTCAACATCACTAGGGGGTTTTTGTTGGATTCTGTATCCAGGGGAGCTGCAACA TGGCCGGAGGAGAATCTTCCTCATTCGAAACCAGTCGGATCCCAGTCGAAGTTCAATTCTCAGATGTGGGGTATGGTGGTTGTTACTGCTGGATGGGATG GACGGATCAGAACGTACGTGAATTACGGGTTACCTCTGCGTGTATGA
AA sequence Show only first row Show all	>Lus10003206 pacid=23155739 polypeptide=Lus10003206 locus=Lus10003206.g ID=Lus10003206.BGIv1.0 annot-version=v1.0 MGCSTAEDRFFDSREELFHLAAAGGVGNIQIWTDKNLDSVQDRRRSFLTWMNLSSDTVSDSEALQSVVEIDNGGGMFRSCDSEDDDGFCSDNTNLSRATS CHSAEARESFPDKDCVCKIRNLDDGREFVVEELDQDGIFGRFREVGSTNQSLTLEEFQRSIGWSPLIQRLLRRRNKLTRKKSNNKKGWLRKKKKLGSLPD KREYNALQKVKVHTHRKKTKQLSSVFTGQEFLAHKGSILTMKFSLDGKYLASGGEDGVVKVWRAVEDYDRLDQFDVSSSDDDPSSSESTCVVFPEKVFRV LEKPMHEFKGHSGEILDLSWSNQKYLLSSSDDNTVRLWKVGCDKCLKVFHHKNYVTCVQFNPVDEDYFISGSIDGKVRIWEVSGCQVVSYTDIREIVTAI AYRPGGEGAIVGTMSGSCIFYEIIDNKMRQDAVVCSQRKTKLPGKRITSFEFSLSDPSRVIVTSADSLVRVLCSTDVICKFRVSRLRIATNQMHATFTSD GKSVVSTSDDSNVYIWNYDKQGKNPSSRAKLIRSYESFVSPNASLAIPWRGIETTPGSTISSSRSQSGHNHHKSSIISSPDCFNITRGFLLDSVSRGAAT WPEENLPHSKPVGSQSKFNSQMWGMVVVTAGWDGRIRTYVNYGLPLRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64610			Transducin/WD40 repeat-like su...		Lus10003206 [exp]	0	1
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	1.4	0.8433
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	2.0	0.8673
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	3.9	0.8226
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	7.1	0.8150
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	16.0	0.8190
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	17.9	0.7984
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	17.9	0.7922
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	19.9	0.8002
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	20.6	0.7750
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	21.1	0.8095

Compare expression of checked genes

Lus10003206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.