Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61850 129 / 8e-35 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT4G24060 125 / 7e-33 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 119 / 2e-31 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT4G00940 116 / 6e-30 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 115 / 1e-29 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT1G64620 115 / 3e-29 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 114 / 3e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G52440 111 / 1e-28 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 111 / 1e-28 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT2G46590 113 / 2e-28 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017313 [exp] 452 / 8e-161 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 452 / 3e-159 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 172 / 5e-51 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10023032 [exp] 166 / 2e-48 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 124 / 1e-32 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10012619 [exp] 124 / 3e-32 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10016566 [exp] 114 / 5e-29 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10014002 [exp] 110 / 9e-29 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10013586 [exp] 111 / 3e-28 AT3G52440 137 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144500 [exp] 178 / 9e-54 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 172 / 2e-51 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 143 / 2e-40 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G018700 [exp] 142 / 8e-40 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 126 / 5e-34 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G009300 [exp] 124 / 2e-33 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G038100 [exp] 114 / 4e-29 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.005G134200 [exp] 113 / 9e-29 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.016G069300 [exp] 111 / 3e-28 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G149100 [exp] 112 / 4e-28 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10003207 pacid=23155763 polypeptide=Lus10003207 locus=Lus10003207.g ID=Lus10003207.BGIv1.0 annot-version=v1.0 ATGAAGAATGGGAAAGCTTTCACTCAAAGCACAGCAGTAGCAGTAGTATTGAAGCTCAAGGGACGTGACTGCCACATAACCCCTCTATACGGGATAGTGG TGAAACCAAGTAATGGTACTACCAATCCACAGAAGTCTGCAGGAGGCAAGATCAATAGTGCTAAAGAAGGGGTGAACTGTCCCAGATGCAATTCGACCAA CACGAAGTTCTGTTACTACAACAACTACAGCCTGACGCAGCCGAGGTACTTCTGCAAGACTTGCAGAAGGTATTGGACTGAAGGTGGCACTTTGAGGAAC ATCCCTGTTGGTGGCGGCTCCCGAAAGAACAAAAGACCTTCTTCTTCTAATTCTACTTCATTTTCTTCTTCATCATCACTTTCTTCCAACACTGCGAAGC AACTACTCCCTGGTTTGGTCTCATCCTCCTCTAATAATTATTCTGCTGCTCCTAGTCTGCCTTCTAGTACGAAAATAGCAGCACCTCAAAACCCTAAGAT GATGATGATGAACCAAGAGGAAGGCCAAGATCTAAATGGCCAGCTGGCATTCCCTAGAAGCTTTACTGAGTTGATGCATCATCATCATCAAGTGCAGCCA TCAATAACAGTTGATGATCATGATCATCAAGATAGGAACAACCAGGTGTCAGCTCTGGAGCTACTGAATAGATCATCAGGAGGACTGAATATTAATTCAG GGAGCTTCATGCATAGCCATGATCATGGTCATGGTCAAGATGCAGGCTTTGACAATTATACATCTGGGTTGAGTTTTCTGCAACATCAGGATTTCAAGCC TAGTAGCAGCAGCTGCAGTAGTTTGAGTTTCTCCCTGGACGGGGTTGGGGATGGGATCAACGGTAATGGTGGTCTTGGGAGGCCGCCCTTGTTGTTTCCA TTTGAAGATCTAAAGCAAGTTCCAACCACTGCTGGTAATGGTAAAGCTAATGATGACCATGATGATCATGGAAGATCAGCAGCAGATTCAAGTGGGTATT GGACTGGGATGTTAGGAGGTGGATCATGGTAA
AA sequence Show only first row Show all	>Lus10003207 pacid=23155763 polypeptide=Lus10003207 locus=Lus10003207.g ID=Lus10003207.BGIv1.0 annot-version=v1.0 MKNGKAFTQSTAVAVVLKLKGRDCHITPLYGIVVKPSNGTTNPQKSAGGKINSAKEGVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRN IPVGGGSRKNKRPSSSNSTSFSSSSSLSSNTAKQLLPGLVSSSSNNYSAAPSLPSSTKIAAPQNPKMMMMNQEEGQDLNGQLAFPRSFTELMHHHHQVQP SITVDDHDHQDRNNQVSALELLNRSSGGLNINSGSFMHSHDHGHGQDAGFDNYTSGLSFLQHQDFKPSSSSCSSLSFSLDGVGDGINGNGGLGRPPLLFP FEDLKQVPTTAGNGKANDDHDDHGRSAADSSGYWTGMLGGGSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003207 [exp]	0	1
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	3.2	0.8641
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10023032 [exp]	5.2	0.8495
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10033218 [exp]	5.5	0.8278
AT2G01818			PLATZ transcription factor fam...		Lus10030763 [exp]	6.6	0.8271
AT1G71140			MATE efflux family protein (.1...		Lus10041053 [exp]	8.2	0.8184
					Lus10008223 [exp]	9.5	0.8223
AT1G11570		NTL	NTF2-like (.1.2)		Lus10020061 [exp]	12.5	0.8562
AT2G36330			Uncharacterised protein family...		Lus10002372 [exp]	13.2	0.8424
AT5G17860		CAX7	calcium exchanger 7 (.1)		Lus10013635 [exp]	15.3	0.7912
AT3G61920			unknown protein		Lus10030204 [exp]	20.5	0.8194

Compare expression of checked genes

Lus10003207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.