Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24060 127 / 6e-33 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT1G64620 122 / 3e-31 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 112 / 3e-28 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 112 / 1e-27 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT5G60200 107 / 1e-26 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT4G00940 105 / 1e-25 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 105 / 2e-25 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G65590 105 / 2e-25 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 104 / 3e-25 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 103 / 4e-25 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017313 [exp] 423 / 3e-148 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 349 / 9e-119 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 151 / 4e-42 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10023032 [exp] 142 / 1e-38 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 112 / 2e-27 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10042114 [exp] 105 / 2e-27 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10012619 [exp] 111 / 3e-27 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10014002 [exp] 105 / 4e-26 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10029767 [exp] 105 / 9e-26 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144500 [exp] 158 / 3e-45 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 148 / 2e-41 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 124 / 2e-32 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 119 / 1e-30 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G018700 [exp] 117 / 6e-30 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 114 / 7e-29 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G081300 [exp] 106 / 1e-25 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G077100 [exp] 105 / 3e-25 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 104 / 6e-25 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.005G188900 [exp] 103 / 8e-25 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10003208 pacid=23155767 polypeptide=Lus10003208 locus=Lus10003208.g ID=Lus10003208.BGIv1.0 annot-version=v1.0 ATGGATACAGCTCAGTGGCCACAGGGGATAGTGGTGAAACCAAGTAATGGTACAACGAATCCACAGAAGTCGGCAGGGGGGAAGATCAATGGTGTTAAAG AAGGGGTGAACTGTCCGAGATGCAATTCGACAAACACAAAGTTCTGTTACTACAACAACTACAGCCTGACTCAGCCGAGGTACTTCTGCAAGACTTGCAG AAGGTATTGGACTGAAGGTGGAACTTTGAGGAACATCCCTGTTGGTGGCGGTTCCAGAAAGAACAAAAGACCTTCTTCTTCTTCTGCATCTTCTTTTTCT TCAGTTTCCCCCAACACTTCAAAGAAACTACTCCCTGGTTTGGTCTCATCCTCCTCTAATTATTCTGCTGCTCCTAGTCTGCCTTCTAGTACGAAAATAG CAGCACCTCAAAACCCTAAGATGATGATGATGAACCAAGAGGAAGGGCACGATCTAAATGGCCAGATGGTCTTTCCTAGAAGCTTTACTGAGTTGATGCA CAATCACCATCATCAAGTGCAGCCAACAATAGCAGTTGATGATCATCATGATAGGAACAACCAGGTGTCAGCTCTGGAGCTACTGAATAGATCATCAGGA GGACTGAATAGTAATTCAGGGAGCTTCATGCATAGCCATGATCATGGTCATGGTCAAGGTCAAGATGCAGGCTTTGACAATTATACATCTGGGTTGAGTT TTCTGCAACATCAGGATTTCAAGCCTAGCAGCAGCAGCAGTAGTTTGAGTTTCTCCCTGGATGGGGTTGGGCTTGGGAGGCCGCCATTGCTGTTTCCATT TCAAGATCTAAAGCAAGTTCCAACCATTGCTAGTAATGGTAAAGCTAATGATGACCATGATGATCATGGAAGAGCAGCAGCAGCAGATTCAAGTGGGTAT TGGACTGGGATGTTAGGAGGTGGATCATGCAGGCGCTACTTCTCCGTTTCTTCCTCTTCATCTTCCCTCTATTCCTCTAGAGAGAGAGAGAGCGGAGATT TGCATGGATGGAAATGGAGATTAAGATTAGGCCAAACTGTGCTTGATTTTACTGTTGCAGTTTATTTGGAGCTGAAATCTAATGTTGACATGACGGTGTT TGAAAATTCAGCTCCTGTGGTATGTACTGGGGAGACGATTGGTTTCTTCATGCCGTGTGACACAAGCGGTGCTTCGGTGATGGAAAGTGAGCCCTGCGCG TTGCATGGCAGCGATGAGGTGGGTATTGGACGCAGGCCATGA
AA sequence Show only first row Show all	>Lus10003208 pacid=23155767 polypeptide=Lus10003208 locus=Lus10003208.g ID=Lus10003208.BGIv1.0 annot-version=v1.0 MDTAQWPQGIVVKPSNGTTNPQKSAGGKINGVKEGVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRPSSSSASSFS SVSPNTSKKLLPGLVSSSSNYSAAPSLPSSTKIAAPQNPKMMMMNQEEGHDLNGQMVFPRSFTELMHNHHHQVQPTIAVDDHHDRNNQVSALELLNRSSG GLNSNSGSFMHSHDHGHGQGQDAGFDNYTSGLSFLQHQDFKPSSSSSSLSFSLDGVGLGRPPLLFPFQDLKQVPTIASNGKANDDHDDHGRAAAADSSGY WTGMLGGGSCRRYFSVSSSSSSLYSSRERESGDLHGWKWRLRLGQTVLDFTVAVYLELKSNVDMTVFENSAPVVCTGETIGFFMPCDTSGASVMESEPCA LHGSDEVGIGRRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003208 [exp]	0	1
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10017313 [exp]	1.0	0.9559
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	3.5	0.8764
AT2G25270			unknown protein		Lus10038102 [exp]	7.9	0.8739
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10007126 [exp]	8.5	0.8611
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10001044 [exp]	10.0	0.8145
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	10.5	0.8619
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023212 [exp]	12.7	0.8581
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	13.6	0.8674
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	13.8	0.8204
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	16.3	0.8373

Compare expression of checked genes

Lus10003208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.