Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61820 432 / 7e-149 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017316 [exp] 788 / 0 AT5G61820 436 / 1e-150 unknown protein Lus10004249 [exp] 494 / 4e-174 AT5G61820 435 / 2e-150 unknown protein Lus10042158 [exp] 486 / 9e-171 AT5G61820 415 / 1e-142 unknown protein Lus10033851 [exp] 326 / 2e-107 AT5G61820 316 / 6e-103 unknown protein Lus10015933 [exp] 319 / 5e-105 AT5G61820 306 / 7e-100 unknown protein Lus10017315 [exp] 201 / 2e-63 AT5G61820 130 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108600 [exp] 501 / 2e-176 AT5G61820 477 / 3e-166 unknown protein Potri.015G108500 [exp] 484 / 2e-169 AT5G61820 470 / 2e-163 unknown protein Potri.015G108800 [exp] 476 / 2e-166 AT5G61820 468 / 7e-163 unknown protein Potri.015G108700 [exp] 474 / 2e-165 AT5G61820 453 / 5e-157 unknown protein Potri.012G110300 [exp] 350 / 8e-119 AT5G61820 366 / 9e-125 unknown protein Potri.012G110600 [exp] 163 / 6e-48 AT5G61820 153 / 4e-44 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07712 [flax] [poplar] SURNod19 Stress up-regulated Nod 19
Representative CDS sequence Show only first row Show all	>Lus10003210 pacid=23155758 polypeptide=Lus10003210 locus=Lus10003210.g ID=Lus10003210.BGIv1.0 annot-version=v1.0 ATGGACCACTGCTCGCAATTTCTGCTGGTTATTGCATCTGTAATTGCTTCACAAGCTGTTCTAGGAAATGGGTATTCCATCAAATCCGCTACTTACTTAT CACCGGAGTTCGTATTAGGGCCAGGATCGGTGGAGAACAGGATATACCCCAGCATCGATTTCCCAACAGGTCACATCGGCATCAAGAGCTTCGATGCCGA AGTCGTTGACCAGCTCGGGAATCCTGTCCCTCTCCACGAAACCTATCTTCATCACTGGGTTTTAGAAAGATACCGTATCTCCAAGAGCAACAATTCCACT GGTGTAGTTGTTAGAAACAGTGGGATATGTCAAGGTACGAAACTTGGACAGTATTATGGACTTGGTTCCGAGACGAGGATGACCTCGACTCGTGTTCCTG ATCCTTATGCAATCCCAGTTGGGGATCCTGCTGAGATTCCGGATGGTTACGAGGAGAAATGGCTGCTGAATGTTCATGCTATCGATACGAGGGGTGTCGA CGACCGATTGGGGTGCACTGAGTGTCTGTGTAGCTTGTATAATGTTACCAGGGATAACTATGTTGGAGGTTTGAAGTGCTGTGAACATCACAGTCAGTGT AAGCTCAAGCAAGGGTTTGAACAGTTTCCTAGGAGGAGTTTGTATTTGAGATATACAGTGAAGTGGGTTGACTGGAATGATGCTGATGAGATTCTTCCAG TTCAGATATTTATCTTTGATGTTACTGATACTGGTAAAAGGCAATCGGATTCCCCATTAGAAGGTTGCAAGGTGGAGTACGACGTTGCATCATGTGAGAC TCATGGCTGGTGCGTCGACATCAAAAGCACACATGTTAGCATACCGACTAGTGGCTATGTCGTCTACGGTGTCGCCCACCAGCACACCGGAGGAATCGGC TCAACTCTCTACCGCAAGGGTGGAGAAGCTATATGCAACTCTGCTCCGATGTATGGTACCGGAGACGAGCCAGGGAACGAGGAGGGGTACATAGTAGGGA TGACCACCTGCTACCCGGAACCAGGATCAGTGAAGATAACAGCTGGGGAAGAGCTAGTTCTGGAATCAAACTATACAAGTACCAGCACTAGGGGACACAC AGGAGTTATGGCGCTGTTCTATATTCTCGTTGCGGACCAAGCACCACCGGCGACATCAAGCATGGGATCGTTGCACGATCCTGTTACTCTGTTCGGTGAG TTGACTGCGAATGCTTGGACGGTCCCGGCGGTGTTGGGAGTAGCGGTGGTTGTGGTTGCTGCTTGGTTTGGTGTTTGGTTGAAGACGAGGAGAGAAACTG AAGATGGGTACCGTGTGATTTCAGCATGA
AA sequence Show only first row Show all	>Lus10003210 pacid=23155758 polypeptide=Lus10003210 locus=Lus10003210.g ID=Lus10003210.BGIv1.0 annot-version=v1.0 MDHCSQFLLVIASVIASQAVLGNGYSIKSATYLSPEFVLGPGSVENRIYPSIDFPTGHIGIKSFDAEVVDQLGNPVPLHETYLHHWVLERYRISKSNNST GVVVRNSGICQGTKLGQYYGLGSETRMTSTRVPDPYAIPVGDPAEIPDGYEEKWLLNVHAIDTRGVDDRLGCTECLCSLYNVTRDNYVGGLKCCEHHSQC KLKQGFEQFPRRSLYLRYTVKWVDWNDADEILPVQIFIFDVTDTGKRQSDSPLEGCKVEYDVASCETHGWCVDIKSTHVSIPTSGYVVYGVAHQHTGGIG STLYRKGGEAICNSAPMYGTGDEPGNEEGYIVGMTTCYPEPGSVKITAGEELVLESNYTSTSTRGHTGVMALFYILVADQAPPATSSMGSLHDPVTLFGE LTANAWTVPAVLGVAVVVVAAWFGVWLKTRRETEDGYRVISA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61820			unknown protein		Lus10003210 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	4.7	0.9285
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	6.0	0.9255
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10020437 [exp]	6.2	0.9268
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	6.3	0.9282
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10039320 [exp]	6.6	0.9077
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10006468 [exp]	9.6	0.8847
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	11.4	0.9208
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10016603 [exp]	14.5	0.8826
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	16.5	0.8945
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	18.5	0.8721

Compare expression of checked genes

Lus10003210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.