Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10790 299 / 7e-97 UBX domain-containing protein (.1) AT4G11740 48 / 1e-05 SAY1 Ubiquitin-like superfamily protein (.1) AT4G00752 46 / 3e-05 UBX domain-containing protein (.1) AT4G23040 46 / 5e-05 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017317 [exp] 454 / 6e-159 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10027684 [exp] 122 / 8e-31 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10039951 [exp] 108 / 2e-26 AT4G10790 117 / 2e-29 UBX domain-containing protein (.1) Lus10036564 [exp] 49 / 7e-06 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10029591 [exp] 48 / 1e-05 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 47 / 4e-05 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10041365 [exp] 43 / 0.0004 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145200 [exp] 337 / 8e-112 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 334 / 2e-110 AT4G10790 520 / 0.0 UBX domain-containing protein (.1) Potri.015G080200 [exp] 136 / 8e-36 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.003G122300 [exp] 50 / 3e-06 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 48 / 1e-05 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 47 / 3e-05 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10003214 pacid=23155735 polypeptide=Lus10003214 locus=Lus10003214.g ID=Lus10003214.BGIv1.0 annot-version=v1.0 ATGGGCGATGTAGCTGATAAATTGGCATATTTCCAGGCGATCACGGGTCTCGAAGATCTGGATTTGTGCACAGAGATCCTTCAAGCTCATGGGTGGGACC TCGATCTTGCGATCTCCTCTTTTACCGGAGGTGACGTCGGCCAAGACACCGCCGCCGCCACGGAGCCTTCCTCGTCGACCACTACTGCCACCGACACTGG TGGGTCGTCCAATTCAGCTGCTCCTCACCCGGTTGTTCGTTCCGATTCAGCTGTTGGACCCGTTGCGGCTCCGGCTCCTGGTTTAACATGGAAATTAGTT ACCTTACCTATATCTGTGATTTCGGGCAGCCTCGGATTGATCTCCGGTGCAGTGGGTCTTGGTCTGTGGGTTGCCGGTGGTGTTCTGTCCTACTCTCTGG GAATGGTTGGGATAGGATCAAGTGCTGGCCGGAACGGGGAGTCTTCAGCACGATTAGCTCCGGTATCTGCTTCCACGAGTGAGGCTACAGATTTTGTGGC AGCTTTCGAGAGGGAGTATGGCTCTAGAGGTCCCAACTTTGTCACAGAAGGTTTCATGGACGCTCTGCAGAGGTCTAGAAACTCATTTAAGCTGCTATTT GTGTATCTGCATTCTCCCGATCACTCAGACAGTCCAGGATTCTGCCAGAGAACTCTGTGTTCAGAGGTGCTATCTGAGTTCATTAACCAGAATTTCGTCG CCTGGGGAGGTAGTATTAGAGCTAGTGAAGGGTTCAAGATGAGCAACAGCTTAAAGGCCTCTAGATATCCGTTTTGTGCTGTGGTTATGCCTGCTACTAA TCAGAGGATCGCTTTGCTTCAACAGATTGAAGGTCCAAAATCTCCAGAAGAAATGCTTGTACTACTACAAAGAGTGCTTGAAGAAAGCGCGCCAGCTAGG GAGCGTCAGAGGATCGAAGAACAAGAACGACTCGAAAGAGAGGCTGGCGGAGCAGAGAGGAAGCTGAAGGAGGAAGAGGAAGCTCGTGAAAGAGCTGCAC AAGAGGCTGCAGAACGAGAGGCTGCTCGTGCCAGAATCCGAGAAGAGAAAGCCTTATCGCTTGGTGTCGAGCCTGCGAAAGGACCCGATGTCACACAGGT CTTGGTTCGATTCCCTAACGGAGAACGCAAAGAGAGGAGGTTCAACAACAGCACTGCAACTGTACAGACTCTTTACGACTACGTCGATTCATCGGGGTGT TTAGGCGACGTAGAAGATTATAGCCTCGTCTCGAATTTTCCGCGAACTGTTTACGGGAGCGAGAAGCGAGGGTTGACGTTGAAAGAAGCCGGATTGCATC CGCAGGCCAGTCTTTTTGTGGAGCTGAACTAA
AA sequence Show only first row Show all	>Lus10003214 pacid=23155735 polypeptide=Lus10003214 locus=Lus10003214.g ID=Lus10003214.BGIv1.0 annot-version=v1.0 MGDVADKLAYFQAITGLEDLDLCTEILQAHGWDLDLAISSFTGGDVGQDTAAATEPSSSTTTATDTGGSSNSAAPHPVVRSDSAVGPVAAPAPGLTWKLV TLPISVISGSLGLISGAVGLGLWVAGGVLSYSLGMVGIGSSAGRNGESSARLAPVSASTSEATDFVAAFEREYGSRGPNFVTEGFMDALQRSRNSFKLLF VYLHSPDHSDSPGFCQRTLCSEVLSEFINQNFVAWGGSIRASEGFKMSNSLKASRYPFCAVVMPATNQRIALLQQIEGPKSPEEMLVLLQRVLEESAPAR ERQRIEEQERLEREAGGAERKLKEEEEARERAAQEAAEREAARARIREEKALSLGVEPAKGPDVTQVLVRFPNGERKERRFNNSTATVQTLYDYVDSSGC LGDVEDYSLVSNFPRTVYGSEKRGLTLKEAGLHPQASLFVELN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10790			UBX domain-containing protein ...		Lus10003214 [exp]	0	1
AT5G37190		CIP4	COP1-interacting protein 4 (.1...		Lus10006453 [exp]	4.5	0.9251
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	4.9	0.9397
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10035459 [exp]	5.7	0.9152
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	9.2	0.9003
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	10.2	0.9183
AT5G57370			unknown protein		Lus10001311 [exp]	13.3	0.9076
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	15.0	0.9072
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10005962 [exp]	15.8	0.9070
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	16.1	0.9108
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	17.0	0.9123

Compare expression of checked genes

Lus10003214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.