Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41990 583 / 0 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 563 / 0 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT3G18750 496 / 2e-167 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 493 / 2e-166 WNK7 Protein kinase superfamily protein (.1.2) AT3G48260 433 / 9e-144 WNK3 with no lysine (K) kinase 3 (.1) AT5G28080 421 / 2e-139 WNK9 Protein kinase superfamily protein (.1.2) AT3G04910 424 / 6e-138 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G22420 419 / 2e-137 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G51630 411 / 1e-134 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 388 / 2e-125 ZIK2, WNK4 with no lysine (K) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017318 [exp] 984 / 0 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10000334 [exp] 792 / 0 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10033225 [exp] 776 / 0 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 528 / 2e-177 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10005983 [exp] 477 / 5e-157 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10041947 [exp] 442 / 3e-146 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 443 / 2e-141 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10020236 [exp] 432 / 8e-141 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 430 / 5e-140 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145300 [exp] 653 / 0 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.001G085500 [exp] 629 / 0 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.008G037200 [exp] 532 / 0 AT5G41990 429 / 8e-145 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.014G101500 [exp] 526 / 2e-177 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.005G057300 [exp] 501 / 4e-168 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G086700 [exp] 455 / 4e-151 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 452 / 4e-150 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.010G225000 [exp] 426 / 5e-144 AT3G18750 389 / 9e-133 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.013G036300 [exp] 439 / 3e-143 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 437 / 3e-142 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003215 pacid=23155744 polypeptide=Lus10003215 locus=Lus10003215.g ID=Lus10003215.BGIv1.0 annot-version=v1.0 ATGGGCGATTCTGGTCCTTTTGACGATGGTGCGGTTGTGGAAACAGATCCGACTGGTCGTTACATTCGGTATGATGAGATCTTGGGCAGAGGGGCATTCA AGACTGTATACAAGGCATTTGATGAGGTTAACGGCATTGAAGTTGCTTGGAACCAAATGAATGTTGAAGATGCATTACAGACGCCAGAACAGTTGGAGAG GCTGTATTCTGAGGTTCATCTGCTTAAATCCTTGAAGAATGTAAATATAATCAAGTCCTATCACTCTTGGGTGGATGACAAGACAGGAACTATCAACATG ATAACAGAGCTGTTCACTTCTGGCAGCTTGAGGCAATATCGCAAGAAACATAAGAATGTTGATTTGAAGGCTATCAAAAACTGGGCCAGACAGATCCTTA GAGGCTTACACTACTTGCACAGCCACAATCCTCCAATCATTCATCGCGATTTGAAATGTGACAATGTGTTTGTCAATGGAAACACGGGAGAAGTTAAAAT TGGAGATCTTGGCTTAGCCACAATCCTGCAGCAGCCAACTGCCCGAAGTGTTATAGGTACTCCTGAATTCATGGCTCCAGAGCTCTACGATGAAGAATAC ACTGAACTCGTTGACATCTATTCTTTCGGCATGTGCATGCTAGAGTTGGTTACTTGTGAATACCCTTACTGCGAATGCAGAAATCCAGCGCAGATTTACA AGAAAGTTTCCTCGGGTGTAAAGCCAGCCTCCCTTGCTAAAGTCGATAACCCTCGAGTTAAGGAGTTCATAGAGAAGTGTTTAGTCCCAGCATCTGCTCG GCTACCTGCAATTGAGCTCCTTAAAGACCCCTTTTTGGCAACTGAGAGTGCAAAGGAGGTCGTCTCTGATTCTCTGAAGCTGTCGCTTCCATCAGAACCA TTTGCAATGGAAATAGATGTTAATATCAAGAAGTCATCAAAAACTTCGGGCATAGAAAGGATGATCGAACCTATGCAGCTCTCACCCGTAGAGGTTGAGA AATACACTGAGAGCAATGGATTCAGATTACGAGGGGAGAAAAATGATGACGATAATACAATCTCGATGTCTCTCCACATTTCAGATCCATCCGGACGAGG AAGATACATACACTTTTCTTTTTTTCTCGACTCGGACACTACTCTCACAATAGCAGAGGAGATGGTTGAACAACTCGTACTGTCGAGCGAAGATGTCCCT GTCATTGCCGAGTTAATAGACAGCTTGATATCAAAACTCGGTGCTAGCAAGGATCATTCTTTTATCAGTGCAACAAGTATGCAGAATGGTTCATATGGCA TGCAGAGCAACTCAACTTCAAACACAGTACATAGCAGTAAAGAGCAGGATAATTGGGCGACGATGAATTCCGATATTACTGCCGACTTTTATCTCTCAGT CTCGTTGGAACACGACGCGAATTCGTCCTCCGATGTTCCTGCAGACCCGAGCTTGTCCAGCATGTGCTGTCTATCGCTTGCTGAGAAAGAAAAGGAGGAT GAGCTACTGCAGATGGAGCTTTCTGCAATTGATATGCAGTATAATGTGGTTTTCCAAGAACTGTCGAGGATGAGGGAAGAAGCAATGGAGAATGCTAAAT TGAAGTGGATGGCCAGGAAAAAGATAGCTGTTGTAAAGGAATACATCTTCCCTCCTTACTCTTGCTGGACAAGAAGCAACATGAACATACATCTCAATGA AAAGTCGGCGGCAGTGAGTCGATGGCCGATACCTACGAAGTCTGCCGGTGAGTTGTGGCCGAGCAACTCATCCAAATCGCAGCTCAATGATGGATTTGAT TTTCCAGGGTTAGATACTCCTGCATTTCTTGTGATTCGATTTTCCAGGGATTGGACACTCTTTGCTGCAGTGGCAGTAATGGCAGGAGGCAGCTATAGCA AATCAATTAAACTGGTTGTTGAAGACGACAGCAGAATCAGTGGCTTACCCGATGCCATACTTTGCGAAATACTCTCTAAACTCGATGACACCGTGCAGGC TGTGAGGACCAGTGTTCTGTCCAGAAGATGGAAGCACCTTTGGACTTGGGTTCCAAGCCTAGACTTGATCGTCCCTTTCGGGTTCCCACTTTGCCCCGAC GTGAAGCATCATGCCAACATATGCGAGATAGTCAAATCACACTGGCTCGTACGCCAGACCTACGGCATATGCGAGTTTGGAAATTCCTTGAACCTGAACT TGACCGACTATTGTGGATCAGCAGCCGCTCTTGCTGCTTCTCATTTCTTGCGTAACCCATCTTACACAGAATGGAACTACCGCGACCTTAGCAGAATGTC TGGAAATAATTCGGATAGAGCAGAATATGTTGCGGAATGGAAGTCCCCAGAGTTTGTAAACCTTGTGCTGTCTAAACACCGGAATCTATCGTGCATTAGA GATTTCAGGCTTCGAGGAAGTTAA
AA sequence Show only first row Show all	>Lus10003215 pacid=23155744 polypeptide=Lus10003215 locus=Lus10003215.g ID=Lus10003215.BGIv1.0 annot-version=v1.0 MGDSGPFDDGAVVETDPTGRYIRYDEILGRGAFKTVYKAFDEVNGIEVAWNQMNVEDALQTPEQLERLYSEVHLLKSLKNVNIIKSYHSWVDDKTGTINM ITELFTSGSLRQYRKKHKNVDLKAIKNWARQILRGLHYLHSHNPPIIHRDLKCDNVFVNGNTGEVKIGDLGLATILQQPTARSVIGTPEFMAPELYDEEY TELVDIYSFGMCMLELVTCEYPYCECRNPAQIYKKVSSGVKPASLAKVDNPRVKEFIEKCLVPASARLPAIELLKDPFLATESAKEVVSDSLKLSLPSEP FAMEIDVNIKKSSKTSGIERMIEPMQLSPVEVEKYTESNGFRLRGEKNDDDNTISMSLHISDPSGRGRYIHFSFFLDSDTTLTIAEEMVEQLVLSSEDVP VIAELIDSLISKLGASKDHSFISATSMQNGSYGMQSNSTSNTVHSSKEQDNWATMNSDITADFYLSVSLEHDANSSSDVPADPSLSSMCCLSLAEKEKED ELLQMELSAIDMQYNVVFQELSRMREEAMENAKLKWMARKKIAVVKEYIFPPYSCWTRSNMNIHLNEKSAAVSRWPIPTKSAGELWPSNSSKSQLNDGFD FPGLDTPAFLVIRFSRDWTLFAAVAVMAGGSYSKSIKLVVEDDSRISGLPDAILCEILSKLDDTVQAVRTSVLSRRWKHLWTWVPSLDLIVPFGFPLCPD VKHHANICEIVKSHWLVRQTYGICEFGNSLNLNLTDYCGSAAALAASHFLRNPSYTEWNYRDLSRMSGNNSDRAEYVAEWKSPEFVNLVLSKHRNLSCIR DFRLRGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10003215 [exp]	0	1
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	1.0	0.9422
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	5.5	0.9088
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	7.2	0.9329
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	9.8	0.9158
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	12.0	0.8981
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	12.6	0.9230
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	14.5	0.9060
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	15.5	0.8707
AT2G32190			unknown protein		Lus10010460 [exp]	15.7	0.9029
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	17.7	0.9094

Compare expression of checked genes

Lus10003215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.