Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58860 51 / 2e-07 F-box/RNI-like superfamily protein (.1) AT2G29930 49 / 9e-07 F-box/RNI-like superfamily protein (.1.2.3) AT1G56610 47 / 7e-06 Protein with RNI-like/FBD-like domains (.1.2.3) AT2G42730 46 / 9e-06 F-box family protein (.1.2) AT5G60610 43 / 8e-05 F-box/RNI-like superfamily protein (.1) AT1G32375 41 / 0.0004 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G10420 41 / 0.0005 FBD / Leucine Rich Repeat domains containing protein (.1) AT5G22670 40 / 0.001 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034972 [exp] 271 / 1e-89 AT1G60660 87 / 1e-20 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420500 [exp] 42 / 0.0003 AT3G62230 166 / 2e-47 DUO1-activated F-box 1, F-box family protein (.1) Potri.011G136200 [exp] 41 / 0.0006 AT1G56400 215 / 2e-64 F-box family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07723 [flax] [poplar] LRR_2 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10003216 pacid=23155736 polypeptide=Lus10003216 locus=Lus10003216.g ID=Lus10003216.BGIv1.0 annot-version=v1.0 ATGGGATTCAGACTATCGCTAGAAAGACATTGCAGTTTTCCTAGTCTCAAGACATTGCAGCTTTGCCACATCCACTTTGGAGCTGCCATAATCTTGAGGC TCATCTCCCGATGCCCGGTTCTTGAAACGCTACATTTAGAGTGGGATTTGGAGTGCCATCATGCTGCTCAGGTGTTCCACATACTCTCTCCTTCACTCAA GTGTATCACCATTTCCACTACTCAGTATGTTCTGCTTAAAAGCGCTGCTACCTCCACGCCCTCCGAACTGTTCTCCACCATTCACATCGCTGCGCCGAAC CTCGTACACCTCAGTTTCCACTTCGCCGGCGGAATTGCTGAATATAAACTCGGTAACACTAATGATGTAATCGATTTCAAGTATCCCACCGTTGCTAGCA AAGATCGTGATGTTCGTCAGGATATTGTTATGATGCCCATCACTGATCTATTCCATGCAGTCCGGAATAAGCTTAAGCTCTCTTGCTCAAGTGATCATTG CATCCGACTGCCAGAACTCAAAAAGCTTACGAATTTGATCATCCGCTTCCGTACCAACGAATACTTCCCTTGTCATTTGATCAAGCATCTTCCGAATTTA GTATTGCTGCATATAGTGGCAGAGGAAGCTTCATCCGGATGTGACACGAACAACATTAGACGAAAGGCGATAATAAGCGACCCACCGAAACACGACATGC CACGATGA
AA sequence Show only first row Show all	>Lus10003216 pacid=23155736 polypeptide=Lus10003216 locus=Lus10003216.g ID=Lus10003216.BGIv1.0 annot-version=v1.0 MGFRLSLERHCSFPSLKTLQLCHIHFGAAIILRLISRCPVLETLHLEWDLECHHAAQVFHILSPSLKCITISTTQYVLLKSAATSTPSELFSTIHIAAPN LVHLSFHFAGGIAEYKLGNTNDVIDFKYPTVASKDRDVRQDIVMMPITDLFHAVRNKLKLSCSSDHCIRLPELKKLTNLIIRFRTNEYFPCHLIKHLPNL VLLHIVAEEASSGCDTNNIRRKAIISDPPKHDMPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58860			F-box/RNI-like superfamily pro...		Lus10003216 [exp]	0	1
					Lus10031595 [exp]	4.9	0.7486
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	12.2	0.6766
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	12.4	0.7405
AT5G27700			Ribosomal protein S21e (.1)		Lus10010971 [exp]	16.2	0.7009
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	22.4	0.6835
					Lus10019810 [exp]	28.6	0.6712
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014110 [exp]	30.6	0.6547
AT2G01260			Protein of unknown function (D...		Lus10017987 [exp]	32.0	0.6325
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	36.9	0.6299
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	45.9	0.6418

Compare expression of checked genes

Lus10003216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.