Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10770 550 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 435 / 2e-143 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 426 / 9e-140 ATOPT8 oligopeptide transporter 8 (.1) AT5G64410 408 / 4e-133 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53510 405 / 5e-132 ATOPT9 oligopeptide transporter 9 (.1) AT1G09930 405 / 9e-132 ATOPT2 oligopeptide transporter 2 (.1) AT4G16370 360 / 1e-114 ATOPT3 oligopeptide transporter (.1) AT4G26590 357 / 2e-113 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 342 / 2e-107 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006581 [exp] 591 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10028445 [exp] 487 / 6e-165 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 475 / 7e-159 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10041897 [exp] 486 / 1e-158 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10007770 [exp] 471 / 1e-157 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10022313 [exp] 456 / 1e-154 AT4G26590 640 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 366 / 1e-117 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10004237 [exp] 351 / 6e-116 AT5G55930 509 / 6e-177 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) Lus10022543 [exp] 364 / 9e-114 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003700 [exp] 601 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 551 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 487 / 1e-163 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 469 / 8e-157 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 463 / 3e-154 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.009G079500 [exp] 413 / 7e-135 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 410 / 2e-133 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 389 / 4e-125 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.016G004800 [exp] 374 / 1e-119 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.006G006000 [exp] 358 / 1e-113 AT4G16370 1284 / 0.0 oligopeptide transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10003217 pacid=23155759 polypeptide=Lus10003217 locus=Lus10003217.g ID=Lus10003217.BGIv1.0 annot-version=v1.0 ATGAATGAAGCACCAGCAGTAGCAGATCCCACCACTAAAAAAACAGAGCACCATGAAGAAGAAGAGAATTCGCCGGTGAAGCAAGTGGCGATGACGGTAC TGACCACCGACGACCCGACCCTACCCGTCCTAACTTTCCGGATGTGGGTCCTGGGGACTCTGTCATGCGTCCTGCTGTCGTTTCTCAACCAGTTCTTCTG GTACCGGAAGGAGCCGATGACCATCACCGCCGTCTCCGCCCAAATAGCGGTGGTTCCATTGGGCCAGCTGATGGCGGCGAAGATTACCAACCGGGTTTTC TTCCGGGGCACCCGGTGGGAGTTTACCCTCAACCCGGGTCCGTTCAACATAAAGGAGCACGTTTTGATCACCATTTTTGCGAATTCTGGGGCGGGGAGTG TTTACGCTATCCATGTTGTGACTGTTGTTAAGGTTTTTTATAAGAAGAATCTCACCTTCTTTGTTTCGCTCATCGTCGTCATCACCACCCAGGTGCTGGG ATTTGGGTGGGCGGGGATATTCCGGCGGTATTTGGTGGAACCGGCGGCGATGTGGTGGCCGGCCAATCTGGTTCAGGTTTCTCTGTTCAGGGCCCTACAC GAAAAGGAAGAACGGACCAAAGGGGGAGTGACACGTATCCAATTCTTCCTCATCGCCCTAACCTGCAGTTTCGCCTACTACATCTTCCCGGGCTATTTAT TCCAAATGCTAACTTCCGTCTCTTGGATTTGCTGGATCTTCCCCTCCTCCATTCTGGCCCAACAACTCGGCTCGGGCTTACACGGGCTCGGAATTGGCGC CGTCGGGTTCGACTGGGCCGCAATCTCTTCCTACCTAAAAAGCCCACTCGCCAGCCCATGGTTTGCCACCGCCAACGTCGCCGCCGGCTTTGTGTTCATC ATTTGTTCACCTCCGCCGGAGACGAGTACAACATCGACTCCATTATCGACCGGTCGCTCCATCTCGATGGTGGATATACACACGAAGCTGATGAGAAAGT ACAAACAAGTGCCAGAATGGTGGTTTTGGGCCATACTAATCGGAACAGTTGGTGCGATAATTTTCGCATGTGAGTATTACAACGAGCAGCTTCAGTTGAA GTGGTGGGGAGTTTTGTTAGCTTGTGCAATTGCTATTGTCTTCACTCTCCCAATTGGCATCATCACTGCCCTTACCAACCAGACTCCTGGACTGAAGATC ATAACAGAGTACATAATAGGGTATATATACCCTGGTTACCCTGTAGCAAACATGTGCTTCAAAACTTATGGATCTATTAGCATGACTCAAGCCATTGTTT TCCTCCAAGACTTCAAACTCGGCCACTACATGAAGATCCCTCCGAGAACCATGTTCATGGCTCAAGTTGTAGGGACACTCGTAGCGTGCTTGACCTACCT AGGCACAGCCTGGTGGCTAATGGAGACGATCCCAGACATCTGCCAACACACGGACTCGAACAACGTATGGACGTGCCCAACCGACACGGTTTTCTACGAC GCGACCGCAATTTGGGGGCTAATCGGGCCCCGCAGGATATTCGGCGACCTAGGAGCGTACTCTGCCGTAAACTGGTTCTTCTTAGGAGGAGCGATCGCCC CTATCCTAGTCTGGCTAGCCACAAAGGCATTCCCCAGACAAAACTGGATAAGGCTCATCAACATGCCGGTCCTCATTGGGGCCACATCGGGGTGCATGCC TCCCGCTACCGCGGTCAATTTCACAAGCTGGATATTGGTTGGGTTCGTGTCAGGGTTCGTGGTGTATCGGTACAAGCCGGATTTGTGGCAGAGGTACAAC TATGTTTTGTCGGGTTCGTTGGATGCCGGGCTGGCTTTTATGGGAGTGATGCTTTATATGTTCTTGGGATTGGAGAATGTGGGTTTGGATTGGTGGGGGA ATGAGCTTGATGGCTGTCCTTTGGCTTCTTGTCCTACTGCTCCAGGTGTTGTCGCCAAAGGATGTCCTGTTTCTAGCTGA
AA sequence Show only first row Show all	>Lus10003217 pacid=23155759 polypeptide=Lus10003217 locus=Lus10003217.g ID=Lus10003217.BGIv1.0 annot-version=v1.0 MNEAPAVADPTTKKTEHHEEEENSPVKQVAMTVLTTDDPTLPVLTFRMWVLGTLSCVLLSFLNQFFWYRKEPMTITAVSAQIAVVPLGQLMAAKITNRVF FRGTRWEFTLNPGPFNIKEHVLITIFANSGAGSVYAIHVVTVVKVFYKKNLTFFVSLIVVITTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRALH EKEERTKGGVTRIQFFLIALTCSFAYYIFPGYLFQMLTSVSWICWIFPSSILAQQLGSGLHGLGIGAVGFDWAAISSYLKSPLASPWFATANVAAGFVFI ICSPPPETSTTSTPLSTGRSISMVDIHTKLMRKYKQVPEWWFWAILIGTVGAIIFACEYYNEQLQLKWWGVLLACAIAIVFTLPIGIITALTNQTPGLKI ITEYIIGYIYPGYPVANMCFKTYGSISMTQAIVFLQDFKLGHYMKIPPRTMFMAQVVGTLVACLTYLGTAWWLMETIPDICQHTDSNNVWTCPTDTVFYD ATAIWGLIGPRRIFGDLGAYSAVNWFFLGGAIAPILVWLATKAFPRQNWIRLINMPVLIGATSGCMPPATAVNFTSWILVGFVSGFVVYRYKPDLWQRYN YVLSGSLDAGLAFMGVMLYMFLGLENVGLDWWGNELDGCPLASCPTAPGVVAKGCPVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	0	1
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10035284 [exp]	1.0	0.8655
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	2.4	0.8591
AT3G24535			unknown protein		Lus10023639 [exp]	3.5	0.8506
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	3.5	0.8522
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	5.9	0.8518
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	6.3	0.8230
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Lus10021551 [exp]	9.2	0.8043
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	9.9	0.8061
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	9.9	0.8587
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10005972 [exp]	12.0	0.8042

Compare expression of checked genes

Lus10003217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.