Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29010 308 / 5e-106 Biotin/lipoate A/B protein ligase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017321 [exp] 484 / 5e-173 AT3G29010 362 / 4e-125 Biotin/lipoate A/B protein ligase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085100 [exp] 329 / 2e-114 AT3G29010 393 / 2e-139 Biotin/lipoate A/B protein ligase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF03099 [flax] [poplar] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family
Representative CDS sequence Show only first row Show all	>Lus10003218 pacid=23155764 polypeptide=Lus10003218 locus=Lus10003218.g ID=Lus10003218.BGIv1.0 annot-version=v1.0 ATGACTGTTCTTCGCCACTCCGGAAAACTTTCTCTCCCGCTGATGAATCTGATCAGATCCGAAGGAATGCCTATACTGGAGCAACTCCAGCTGGAAGAGA AGCTCCTACGAACATCTGCAGACAATTGGTGTATCGTAAACGACGGAACAAATTCCCCTTCCATCGTTATGGGCGTATCAGGGAAACCTGCAGAGCTTCT CAATAGCAAGCTTGTATTATCACCAGACGATAAAGTTCCTCCTGTTATCAGAAGGTTCACTGGTGGCGGGACTGTGATTGTCGACGGCGGGACTATTTTC GTCACTCTGATATGCAACAAGGACGATATTCCAAAGGTGCAGCCATATCCTCGTTCGATTATGCAATGGAGTGGTGTTTTGTATGATCAAGTGTTTCGAG GGATAGGCGATTTCCATCTGCGCGAGAACGATTATGTATTTGGTGATCGAAAGTTCGGTGGGAATGCTCAATCGATAACTAAAAGCCGGTGGATTCACCA CACTTCGTTTCTGTGGGACTTCGAGGATCGGAATATGGAGTATCTGAAGCTACCTTCTCGTGCGCCTGGATACAGATTGGCGAGAGAGCATACGGAATTT GTGTGCCGAATGAGGGAGTATTTGCAGAGAGGAGATTTCATGGATAGAACCATTGAAGCTCTTGAGAACTGGTTCACAGTGCAACCAGTGAGCTTGGAAG CAGTTGGTTCCCCTGAGATGGCGAAATTCGTTCCCTCAACGAGAATTCTGTCGAAGCAAGAACTTGAAGCTGCTTTCGCATCTACATCTGGAAGAATGGA TCACAGTCCCACACCTGATTATTAA
AA sequence Show only first row Show all	>Lus10003218 pacid=23155764 polypeptide=Lus10003218 locus=Lus10003218.g ID=Lus10003218.BGIv1.0 annot-version=v1.0 MTVLRHSGKLSLPLMNLIRSEGMPILEQLQLEEKLLRTSADNWCIVNDGTNSPSIVMGVSGKPAELLNSKLVLSPDDKVPPVIRRFTGGGTVIVDGGTIF VTLICNKDDIPKVQPYPRSIMQWSGVLYDQVFRGIGDFHLRENDYVFGDRKFGGNAQSITKSRWIHHTSFLWDFEDRNMEYLKLPSRAPGYRLAREHTEF VCRMREYLQRGDFMDRTIEALENWFTVQPVSLEAVGSPEMAKFVPSTRILSKQELEAAFASTSGRMDHSPTPDY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10003218 [exp]	0	1
AT1G63855			Putative methyltransferase fam...		Lus10028415 [exp]	2.4	0.9086
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10038889 [exp]	3.9	0.8963
AT4G27130			Translation initiation factor ...		Lus10039660 [exp]	5.1	0.9135
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	19.2	0.8809
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	21.8	0.8980
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	23.7	0.8733
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	25.1	0.8930
AT2G37480			unknown protein		Lus10025314 [exp]	26.1	0.8806
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	26.7	0.8969
AT3G10260			Reticulon family protein (.1.2...		Lus10020718 [exp]	30.5	0.8666

Compare expression of checked genes

Lus10003218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.