Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004715 [exp] 77 / 3e-17 AT4G16570 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Lus10008514 [exp] 43 / 3e-06 ND 55 / 2e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076500 [exp] 64 / 9e-13 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003223 pacid=23140792 polypeptide=Lus10003223 locus=Lus10003223.g ID=Lus10003223.BGIv1.0 annot-version=v1.0 ATGGAATTGATCTTAAGGATCACATTCCAAACGGCTACTAGGAGCAGATCGACTCCTATGGATAGAGATGTAGATGAATGGAGCAAATTATTGTTTACAA ATGAGAGATACTGGAAACAAGGCGTGAAGCTGCTATCACAGCCGGTCTCGGTTGGAACTCAGGGCAGTAACTCGGGTAGATTCTCTTCATTTGTAATCGA AGCGGTGTTTGACCAATTTACCGGTGAAGTCATTGTTGAGAATGACTTATATGTTAGAGAGATTGAGACAGTAAGTGCTGTATTTTTAAGCACTCTTGTA GCCTCGGGGAGCTGTTTCTATCGCTGTCTTGCCACGACCAAGCTACAAATTCATCTTCTCTTCTCGCGTTTATGGTTGGAAGATGTTGAAGACGACGATG GAAGCTAG
AA sequence Show only first row Show all	>Lus10003223 pacid=23140792 polypeptide=Lus10003223 locus=Lus10003223.g ID=Lus10003223.BGIv1.0 annot-version=v1.0 MELILRITFQTATRSRSTPMDRDVDEWSKLLFTNERYWKQGVKLLSQPVSVGTQGSNSGRFSSFVIEAVFDQFTGEVIVENDLYVREIETVSAVFLSTLV ASGSCFYRCLATTKLQIHLLFSRLWLEDVEDDDGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003223 [exp]	0	1
					Lus10011588 [exp]	1.7	0.8436
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020851 [exp]	3.0	0.7364
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032256 [exp]	3.5	0.6899
AT5G42905			Polynucleotidyl transferase, r...		Lus10005922 [exp]	7.7	0.7449
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	21.5	0.6622
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	25.2	0.6697
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10002190 [exp]	28.0	0.5148
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	31.3	0.6591
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	35.9	0.6218
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	36.8	0.6452

Compare expression of checked genes

Lus10003223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.