Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 724 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 721 / 0 RLK receptor lectin kinase (.1) AT4G02420 678 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 664 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 635 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 597 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 595 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 570 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 555 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G43700 554 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035627 [exp] 1166 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10008597 [exp] 1032 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 1031 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 634 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 632 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 622 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 621 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 620 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 615 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088680 [exp] 843 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 838 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 823 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 821 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 814 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 781 / 0 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 735 / 0 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 637 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 637 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 635 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10003224 pacid=23182519 polypeptide=Lus10003224 locus=Lus10003224.g ID=Lus10003224.BGIv1.0 annot-version=v1.0 ATGGCCATGTTCCCAAAACTCGCAGTCTTCTTCTTCTTGCTAATTACTTCAGTAGCATCATCCTCAAACGACGTCGGTTTCAAATACAACCGATTCCCGG CGGCCAACCTCGTACTCGATGGCATAGCAGAGTACACTTCCGACAACCTCATCAGGCTCACCAACGACACAGTGCAGCAAGAAGGCCACGCCTTTTATCC AGACCCGGTATCGTTCAAGAACGATCCGAATGGTACCGTTTCGTCCTTCTCGACTTCCTTCGTCGTTGCAATTGTACCTCAGTACGCGGATCTCGGAGGC CACGGGATCGCCTTCGTGATCTCCCCCAACAGAGGCCTCCCCAATTCGCTGCCGAGCCAATACCTCGGACTGTTCAACAAGTCCAACATCGGGAATTTCT CCAACCACGTGTTCGCGGTCGAGCTGGACACGATCTACAGCAGCGAGTTCGGGGATATCGATAACAATCACGTCGGGATTGATATCAACGGACTGGATTC GAAGTCGGCAGCTCCGGCAGGGTACTATGATGATTCTGATGGCCAGTTTGTGAATTTGACTTTTATTTCTGGCAAGCCGATTCAGGTTTGGGTTGACTAC GACAGCGGAGGGAAGAGAATTAACGTCACTTTGGCTCGGGTCAACGGCGCCAAACCGAAGAAACCGTTGATTTCATTTCCCCAAGACCTGTCAGAAGTTT TGCAGGATGAGATGTTCATCGGGTTCTCATCGTCTACAGGATCGTTCCTGACGCATCATTATGTATTGGGTTGGAGCTTTAAGATGAACGGTCAAGCTGA AGATTTAACCGTCTCTCCACTTCCCAAGCTTCCGAGGATCGGAGAACGAAAAGAAAGGTCGAAAATTGTGATGATTGGGATTCCTGTGATTTCCATCGCT CTGGCTCTGGCGATTGGTTCAGGAATTGTTTATTACGTCAGGAGGAAGAGGAAATTTGCAGAAGTGTTGGAAGATTGGGAGGTCGACTACGGTCCGCACA GGTTCAAGTTCAAGGATTTGTACGTCGCCACGAAAGGGTTTCGGGCGAAGGAGGAATTGGGGCGAGGTGGATTCGGGACAGTTTACAAGGGAATCCTGCG GAAGACGAATAACGAGATAGCCGTGAAGAGGGTGTCTCATGATTCCAGGCAAGGGATGAGGGAATTCGTGGCGGAAATTGTTAGCATCGGCCGACTTCGT CATCGTAATTTGGTGAGTTTGCTGGGCTATTGTCGAAGGAAGGGGGAGTTGCTGTTGGTTTACGATTTCATGCCCAATAGTAGTTTAGACAAGTATCTTT ACGGTGATCAGGATACATTGATTCTGAAATGGTGCCTCAGGTTCAAAGTTCTAAAGGGCGTGGCTTCAGGGTTGTTCTACCTGCACGAGGAATGGGAACA AGTTGTGATTCATCGAGATGTGAAAGCAAGCAATGTTATGATAGACAGCGAATGGAACGGCAGATTGGGCGATTTTGGCCTAGCGAGGCTATACGATCAC GGGTCGGATCCTCGAACAACGCATGTCGCTGGCACTCCCGGGTACCTCGCACCCGAACATGCCCGTACGGGAAAGGCCACAACGAGTAGCGATGCTTACG CTTTCGGTGCATTTTTGCTAGAGGTGGCATGCGGGAGGAGGCCAATTGACCCAGAGAAGCCAGCAGGTCAGGTGATTTTGGTCGATTGGGTGTTCTCATG TTGGCTTGGTGGTGACATTTTAGAAGCTACGGATCCAAATCTCGGCGAAGAGTTTGTAGCCGAGGAAGTGGAGTTGGTTTTGAAACTCGGTTTGTTGTGT TCTCATTCCGATCCTGAAGCTCGGCCGAGTATGCGACAGGTTCATCAGATGTTGGGAGGCGAATTACCTTTGCCTGATATGTCGTCCATGGGACTTTCAA TTTCTGCAGTCGGGCTTAACTATACTCGCCGTGAGCGCCTCGTGGAATTGGCTATGTCTTCAGGTTCTTCCTCTGCGTCATTCAACCATATGTCTTCTGC GGAAGCGTCACTTGTATATGGTGGCCGCTAA
AA sequence Show only first row Show all	>Lus10003224 pacid=23182519 polypeptide=Lus10003224 locus=Lus10003224.g ID=Lus10003224.BGIv1.0 annot-version=v1.0 MAMFPKLAVFFFLLITSVASSSNDVGFKYNRFPAANLVLDGIAEYTSDNLIRLTNDTVQQEGHAFYPDPVSFKNDPNGTVSSFSTSFVVAIVPQYADLGG HGIAFVISPNRGLPNSLPSQYLGLFNKSNIGNFSNHVFAVELDTIYSSEFGDIDNNHVGIDINGLDSKSAAPAGYYDDSDGQFVNLTFISGKPIQVWVDY DSGGKRINVTLARVNGAKPKKPLISFPQDLSEVLQDEMFIGFSSSTGSFLTHHYVLGWSFKMNGQAEDLTVSPLPKLPRIGERKERSKIVMIGIPVISIA LALAIGSGIVYYVRRKRKFAEVLEDWEVDYGPHRFKFKDLYVATKGFRAKEELGRGGFGTVYKGILRKTNNEIAVKRVSHDSRQGMREFVAEIVSIGRLR HRNLVSLLGYCRRKGELLLVYDFMPNSSLDKYLYGDQDTLILKWCLRFKVLKGVASGLFYLHEEWEQVVIHRDVKASNVMIDSEWNGRLGDFGLARLYDH GSDPRTTHVAGTPGYLAPEHARTGKATTSSDAYAFGAFLLEVACGRRPIDPEKPAGQVILVDWVFSCWLGGDILEATDPNLGEEFVAEEVELVLKLGLLC SHSDPEARPSMRQVHQMLGGELPLPDMSSMGLSISAVGLNYTRRERLVELAMSSGSSSASFNHMSSAEASLVYGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	0	1
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	1.4	0.9696
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	2.8	0.9689
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	4.6	0.9634
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	5.3	0.9603
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	6.0	0.9631
AT2G29150			NAD(P)-binding Rossmann-fold s...		Lus10010877 [exp]	6.7	0.9548
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	8.2	0.9520
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	8.8	0.9535
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	8.9	0.9611
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	8.9	0.9510

Compare expression of checked genes

Lus10003224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.