Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43590 213 / 6e-68 Chitinase family protein (.1) AT3G54420 210 / 1e-66 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 199 / 2e-62 Chitinase family protein (.1) AT2G43610 194 / 4e-60 Chitinase family protein (.1) AT2G43620 182 / 1e-55 Chitinase family protein (.1) AT2G43570 176 / 1e-53 CHI "chitinase, putative", chitinase, putative (.1) AT1G56680 147 / 2e-42 Chitinase family protein (.1) AT1G02360 143 / 9e-41 Chitinase family protein (.1) AT4G01700 141 / 5e-40 Chitinase family protein (.1) AT3G47540 139 / 5e-40 Chitinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035624 [exp] 459 / 5e-164 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10003226 [exp] 319 / 1e-108 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035625 [exp] 289 / 5e-97 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10000217 [exp] 268 / 1e-90 AT3G54420 89 / 1e-21 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024368 [exp] 269 / 3e-90 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10010861 [exp] 268 / 6e-90 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 267 / 1e-89 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10032794 [exp] 259 / 1e-86 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10003587 [exp] 256 / 2e-85 AT2G43590 270 / 1e-91 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 243 / 2e-79 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 237 / 2e-77 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 236 / 6e-77 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 233 / 2e-75 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 226 / 6e-73 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 206 / 3e-65 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 196 / 4e-61 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.002G186500 [exp] 151 / 6e-44 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.014G111800 [exp] 151 / 9e-44 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182000 [exp] 132 / 3e-36 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10003227 pacid=23182522 polypeptide=Lus10003227 locus=Lus10003227.g ID=Lus10003227.BGIv1.0 annot-version=v1.0 ATGCCCAAGTTTCCACACGTAGCCTTCTTCCTTCTCCTCCTAGCCGTTCCTTTCGGACTAGCCACGGCTAGAGACGTAACCACCATCGAGGTCGTCGACT CATCTCCTTGCCCTGACCAACTCAATCAGCAGATTACAGATCTCGATCAATTTGATGCGGATTTTGATCAGGACTCCCTCGAAGAAATCGATTCGGAGGA ACAACAGTACTTTGATGATGATGAAGCCTTGGACGACGGTGGGTACATAGTAATGCCAACTGACGACGAGGAGGGGACTGATTCGTCGTCGCTGGCAGAC GATGATGATGAAGATGATTCGGTGTCCGAAGAGGAGGGCAAATTGGGTATTCATGTTGGGAAAGTAGTGACATCGGCGTTCTTCAACAGCATTATTAGAC GGGCGGATCCAAGCTGTAAAGGGAAGCGATTCTACACCAGGGGTGCATTCCTCAATGCCACCAAATCATACCGCAAGTTTGGAAATCTCTCCAGAACTGC TGCTAAGCGTGAAATTGCTGCCTTTTTCGCCCACGTCACTCACGAAACTGGACATTTGTGCTATATTGAGGAGATTCAGAAGTCAACGTACTGCGACCGG GGATCGGAGAGACAGTGGCCGTGCGCTCCAGGGAAGCAATACTTCGGGAGGGGCCCACTTCAGATTACATGGAACTACAACTACGGTCCGTGCGGGAAAG CCAACAGGTTTAACGGCTTGAAGAACCCTGACATCGTGGCGAAGAATCGCGTCATCGCGTGGAAGACGGCACTCTGGTTCTGGATGAAGAATGTTCGCCG CGTTCTGCCCCGCGGGTTCGGTGCCACGATTCGGGCCATAAACGGCGGGGAGTGCAACGGCGGAAGACCTGCCGCCGTTGCTGCTCGGGTTAAGTACTAC AGGAGATACTGCAAGCGCTTCAATGTAACGACGGGACCTAAAGTCAGCTGTTAG
AA sequence Show only first row Show all	>Lus10003227 pacid=23182522 polypeptide=Lus10003227 locus=Lus10003227.g ID=Lus10003227.BGIv1.0 annot-version=v1.0 MPKFPHVAFFLLLLAVPFGLATARDVTTIEVVDSSPCPDQLNQQITDLDQFDADFDQDSLEEIDSEEQQYFDDDEALDDGGYIVMPTDDEEGTDSSSLAD DDDEDDSVSEEEGKLGIHVGKVVTSAFFNSIIRRADPSCKGKRFYTRGAFLNATKSYRKFGNLSRTAAKREIAAFFAHVTHETGHLCYIEEIQKSTYCDR GSERQWPCAPGKQYFGRGPLQITWNYNYGPCGKANRFNGLKNPDIVAKNRVIAWKTALWFWMKNVRRVLPRGFGATIRAINGGECNGGRPAAVAARVKYY RRYCKRFNVTTGPKVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43590			Chitinase family protein (.1)		Lus10003227 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000217 [exp]	1.0	0.9010
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	2.8	0.7236
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10027205 [exp]	7.2	0.6953
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	18.7	0.7114
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	25.7	0.6783
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	26.2	0.7139
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	30.7	0.6729
AT4G39700			Heavy metal transport/detoxifi...		Lus10019676 [exp]	52.4	0.5897
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	61.0	0.6917
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10019185 [exp]	103.6	0.5977

Compare expression of checked genes

Lus10003227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.