Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29870 223 / 1e-75 Oligosaccharyltransferase complex/magnesium transporter family protein (.1) AT2G19340 213 / 3e-71 Oligosaccharyltransferase complex/magnesium transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035623 [exp] 268 / 3e-93 AT4G29870 283 / 3e-99 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G139600 [exp] 210 / 4e-70 AT4G29870 225 / 3e-76 Oligosaccharyltransferase complex/magnesium transporter family protein (.1) Potri.006G072600 [exp] 190 / 3e-62 AT4G29870 189 / 3e-62 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF04756 [flax] [poplar] OST3_OST6 OST3 / OST6 family, transporter family
Representative CDS sequence Show only first row Show all	>Lus10003228 pacid=23182533 polypeptide=Lus10003228 locus=Lus10003228.g ID=Lus10003228.BGIv1.0 annot-version=v1.0 ATGGCTCCCAAATTGGATCCCCAAGCTCTTCAATCGGAGTCAGCAAATGGATCAATCGATCCACTATTCCACCTCCTCAGAGTCGTCCCTTACTCCGTCA TCCTCCGCCCTCCCCGCCTCCGTCTCAAGCTTCCATCCCTGACCCTCCCTTCGCCCATGACGGTTTTCGCCCTGGTTCTGCTGACCTACTTCATGGTCAT CTCCGGTTTCGTCTACGATGTCATCGTCGAGCCTCCCGGTATCGGATCCGTCCAGGATCCCGTTACCGGCTCCGTACGACCCGTCGTGTTCATGTCCGGC CGAGTGAACGGCCAGTACATCATCGAAGGCCTGTCGTCGGGATTCATGTTTGTTCTCGGTGGGATCGGGATCATTCTGTTGGATCTTGCCCTTGACAAGA ATCGCGCGAAGAGTGTCAAGGTTTCATATGCCTCTGCTGGGGTCACCTCCATTGTGCTTGCCTACGTGATGAGTATGCTGTTTATTCGCATTAAGATCCC CGGTTATTTAAGATGA
AA sequence Show only first row Show all	>Lus10003228 pacid=23182533 polypeptide=Lus10003228 locus=Lus10003228.g ID=Lus10003228.BGIv1.0 annot-version=v1.0 MAPKLDPQALQSESANGSIDPLFHLLRVVPYSVILRPPRLRLKLPSLTLPSPMTVFALVLLTYFMVISGFVYDVIVEPPGIGSVQDPVTGSVRPVVFMSG RVNGQYIIEGLSSGFMFVLGGIGIILLDLALDKNRAKSVKVSYASAGVTSIVLAYVMSMLFIRIKIPGYLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	0	1
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	1.0	0.9353
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	1.4	0.9334
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	1.7	0.9291
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031278 [exp]	3.5	0.9129
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	3.9	0.8821
AT5G06660			Protein of unknown function DU...		Lus10016235 [exp]	4.4	0.8755
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	4.9	0.8986
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	5.1	0.8838
AT4G12340			copper ion binding (.1)		Lus10032225 [exp]	5.5	0.8943
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	6.0	0.8960

Compare expression of checked genes

Lus10003228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.