Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19330 408 / 5e-142 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G26050 371 / 2e-127 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT4G29880 366 / 1e-125 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT3G11330 199 / 3e-59 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT1G12970 191 / 1e-56 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT5G05850 192 / 2e-56 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G26500 182 / 6e-53 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT4G35470 146 / 4e-39 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 141 / 2e-37 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G15410 95 / 3e-21 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035622 [exp] 269 / 6e-91 AT2G19330 158 / 8e-48 plant intracellular ras group-related LRR 6 (.1) Lus10013689 [exp] 183 / 6e-54 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10017948 [exp] 185 / 1e-53 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10000900 [exp] 158 / 1e-43 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10035976 [exp] 157 / 5e-43 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10004559 [exp] 141 / 5e-40 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 149 / 2e-39 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000681 [exp] 86 / 4e-19 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1) Lus10021635 [exp] 85 / 1e-18 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G072700 [exp] 423 / 4e-148 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.018G139700 [exp] 416 / 1e-145 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.012G085600 [exp] 189 / 2e-55 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.015G083800 [exp] 189 / 3e-55 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.010G046500 [exp] 181 / 8e-53 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.007G065000 [exp] 156 / 1e-42 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 151 / 5e-41 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.001G144100 [exp] 145 / 4e-39 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 140 / 4e-37 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.019G120733 [exp] 88 / 1e-18 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10003229 pacid=23182517 polypeptide=Lus10003229 locus=Lus10003229.g ID=Lus10003229.BGIv1.0 annot-version=v1.0 ATGATGTACGAACAGCCGCTGCCGGCGGCGCAGCCGCCTGCAGTGACGATACCCACGAACTTGGAGAAACAGCTAATAATAAGTACAGATCATGATGTTG ATAAAGAAAGGCTGGAAATCGTGGATCTAAGCGGCATGTCGTTTGATACGCTCCCTGATCCTCCCATTAACTTGGCATGCATTTGCAAGCTTGATCTATC AAACAACAATCTTCAGAGCATTCCTGAGTCATTAACAGCTAGATTACTGAATGTGGTGGTACTGGATCTTCATTCGAATCAGCTCAAATCCCTACCCAAT TCCATCGGATGTTTATCTAAGCTTAAGGTGTTGAATGTTGCTGGGAACCTTCTCGTCTATCTTCCGAAAAGTATCGAAAATTGCAGATCTTTGGAGGATC TAAACATCAACTTCAACAAACTGACGAGACTACCAGAAAGCATGGGATACGAGCTATTCAACCTGAAGAAACTATCAATGAACTCAAACTTCCTCGACTT CCTCCCGGCATCAATAACCCACCTCACTTCCTTAAGAACACTCGACGCCCGCCTCAACAAACTAAGATCCTTACCGGAAGACATCGACAACCTCATCCAC CTCCAGATCCTCAACGTCAGCCAGAACTTCCACTTCCTCGAGACCTTACCCCACGCCGTCGGCATGCTCATCTCCCTCGAGGAGCTTGACGTCAGCTACA ACAAGATCAGGACGCTGCCGGACTCCATCGGCGGCCTAAGGAGGCTGAGGAAGCTCGGTGTCGAAGGGAACCCTCTCGCTTCGCCGCTGGCGGAGGTCGT GGAGCACGGCGTCCACGCCGTTAAGGAGTACTTGACTGCCCGGAAGATGAACGGCGGGGAGGATGTGATTAGTCATCATCACGGCGGCCGGAAGAAGCGG TCGTCGTGGGTTGGGAAGTTGGTTAAGTGTGGCACGTTTAATGGGGGCCACGTCAGGAGCGAGGAGAGAGAAGGGTTCATCCACGTGGCGGATAATTATG GGTCGATTGATGCGCTTGCGTCTCCCAGGCACGTGGCGGCTTTCTCGCCACGTAGGATGTTCTCTCACATGAATGTTTTCATGGGCAGATGA
AA sequence Show only first row Show all	>Lus10003229 pacid=23182517 polypeptide=Lus10003229 locus=Lus10003229.g ID=Lus10003229.BGIv1.0 annot-version=v1.0 MMYEQPLPAAQPPAVTIPTNLEKQLIISTDHDVDKERLEIVDLSGMSFDTLPDPPINLACICKLDLSNNNLQSIPESLTARLLNVVVLDLHSNQLKSLPN SIGCLSKLKVLNVAGNLLVYLPKSIENCRSLEDLNINFNKLTRLPESMGYELFNLKKLSMNSNFLDFLPASITHLTSLRTLDARLNKLRSLPEDIDNLIH LQILNVSQNFHFLETLPHAVGMLISLEELDVSYNKIRTLPDSIGGLRRLRKLGVEGNPLASPLAEVVEHGVHAVKEYLTARKMNGGEDVISHHHGGRKKR SSWVGKLVKCGTFNGGHVRSEEREGFIHVADNYGSIDALASPRHVAAFSPRRMFSHMNVFMGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	0	1
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10042494 [exp]	2.4	0.8936
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	3.2	0.8995
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042641 [exp]	3.7	0.8642
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	7.2	0.8645
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	8.1	0.8209
AT5G67640			unknown protein		Lus10011552 [exp]	9.1	0.8940
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	9.2	0.8439
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	10.0	0.8494
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	10.4	0.8916
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10035914 [exp]	10.8	0.8727

Compare expression of checked genes

Lus10003229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.