Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43590 238 / 3e-79 Chitinase family protein (.1) AT3G54420 237 / 9e-79 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 227 / 1e-74 Chitinase family protein (.1) AT2G43620 223 / 7e-73 Chitinase family protein (.1) AT2G43610 218 / 5e-71 Chitinase family protein (.1) AT2G43570 212 / 1e-68 CHI "chitinase, putative", chitinase, putative (.1) AT3G47540 179 / 1e-56 Chitinase family protein (.1.2) AT1G56680 176 / 1e-54 Chitinase family protein (.1) AT2G43600 158 / 1e-47 Chitinase family protein (.1) AT4G01700 152 / 4e-45 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035620 [exp] 368 / 2e-128 AT2G43590 223 / 6e-71 Chitinase family protein (.1) Lus10035618 [exp] 323 / 4e-113 AT2G43590 229 / 1e-75 Chitinase family protein (.1) Lus10024367 [exp] 295 / 5e-102 AT3G54420 226 / 3e-74 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010866 [exp] 288 / 3e-99 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024366 [exp] 276 / 1e-94 AT3G54420 226 / 2e-74 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010863 [exp] 271 / 1e-92 AT3G54420 206 / 2e-66 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035621 [exp] 273 / 1e-90 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003587 [exp] 264 / 6e-90 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10024368 [exp] 264 / 7e-90 AT2G43590 264 / 2e-89 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 277 / 2e-94 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 271 / 6e-92 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 270 / 9e-92 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 269 / 3e-91 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 265 / 2e-89 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 241 / 4e-80 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 239 / 3e-79 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.004G182000 [exp] 169 / 3e-51 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 166 / 2e-50 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 164 / 4e-50 AT4G01700 422 / 1e-150 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10003231 pacid=23182521 polypeptide=Lus10003231 locus=Lus10003231.g ID=Lus10003231.BGIv1.0 annot-version=v1.0 ATGGCAAAACTTCTTCAGCTACTCATAGCAGCCATAGCCACACTCGTGGCCTCTTTGGCCATCACCACCACCGTCGTGGAAGCTCAGGTTGCTAACATAG TCACCCCAGCTTTCTTCAACGGCATCCGCAACCGCGCCGGCAACAACTGTGCCGGGAAGTCATTCTACACCCGCGAGGCCTTTATCCAGGCTGCTAGGTC CTACCCTAGCTTCGGCAACCGGGGCTCCGATGCCGGCTCCAAGCGCGAGATCGCGGCCTTCTTCGCCCATGTCACCCACGAAACCGGAAGTATGTGCTAC ATTGAAGAAATTAACAAGGCAGAATATTGCGACCGGAGCCGGTACCCATGTGCTCAGGGGAAAAGATACTACGGCCGGGGCCCACTTCAGCTGACGTGGA ACTACAACTACGCAGAAGCCGGGAAAGCCAACGGATTTGACGGGGTGGCGAACCCAGACATCGTGGCTAGAGACCCGGTGCTTGCGTGGAGGACGGCGTT GTGGTTTTGGATGACAAATGTTCGTGCCGTCCTTCCTCAGGGGTTCGGAGCCACCATCCGTAAGATTAACAGCATGGAGTGTAACGGCGGCAACACTCCT GCCGTTAACGCTCGGGTCAGCTACTATACCCAGTACTGCCAGCAGCTCGGAATTGGCGTTGACGCTAACGCCCGCTGTTAA
AA sequence Show only first row Show all	>Lus10003231 pacid=23182521 polypeptide=Lus10003231 locus=Lus10003231.g ID=Lus10003231.BGIv1.0 annot-version=v1.0 MAKLLQLLIAAIATLVASLAITTTVVEAQVANIVTPAFFNGIRNRAGNNCAGKSFYTREAFIQAARSYPSFGNRGSDAGSKREIAAFFAHVTHETGSMCY IEEINKAEYCDRSRYPCAQGKRYYGRGPLQLTWNYNYAEAGKANGFDGVANPDIVARDPVLAWRTALWFWMTNVRAVLPQGFGATIRKINSMECNGGNTP AVNARVSYYTQYCQQLGIGVDANARC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003231 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014226 [exp]	1.0	0.9658
AT1G03220			Eukaryotic aspartyl protease f...		Lus10036343 [exp]	9.2	0.9564
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	19.1	0.9597
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	20.2	0.9610
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	24.7	0.9587
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	28.8	0.9577
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	36.7	0.9559
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	38.5	0.9557
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10013417 [exp]	38.8	0.9397
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029369 [exp]	39.2	0.9532

Compare expression of checked genes

Lus10003231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.