Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35130 757 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 466 / 9e-153 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 465 / 8e-152 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 462 / 2e-150 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 442 / 7e-143 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 439 / 3e-142 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 439 / 9e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 416 / 6e-135 MEF22 mitochondrial editing factor 22 (.1) AT4G30700 412 / 2e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 408 / 4e-130 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035619 [exp] 1505 / 0 AT4G35130 794 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 466 / 2e-152 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 462 / 3e-150 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 456 / 8e-149 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018897 [exp] 469 / 4e-148 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 452 / 1e-145 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 448 / 1e-145 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 451 / 3e-145 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 444 / 2e-143 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178200 [exp] 947 / 0 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 484 / 7e-160 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G466066 [exp] 478 / 2e-157 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 480 / 3e-157 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 466 / 6e-153 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 457 / 9e-149 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 446 / 5e-144 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 444 / 8e-143 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 438 / 2e-140 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 421 / 5e-137 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003233 pacid=23182529 polypeptide=Lus10003233 locus=Lus10003233.g ID=Lus10003233.BGIv1.0 annot-version=v1.0 ATGGCGGCAATTCTTCGCAGCTGCTGCTGCAACAACTCATTCAAGCCAATCGAGAATCCCACAAAACAATCCAAAGCAATAAAGCAAGCTCAAATCCCCC CACGCTCTGCAAAATCATCATGGAGCAAACCCAACAGTCTGGGACTCACTCGTTCCCTTACAGCAGTGGTAGACTCGGGTTCGATGGACACCGCGCTCAA GCTGTTCGACAAAATGAACCATTCAGACACCTTCATATGGAACGTCATGATCAGAGGGTTCACACGCAACGGGTTGTTCTCTGAAGCCGTATATTTTCAC CGGAGGATGGAGCGAGACAGGGTTAGGATCGATCACTTCACTTTCCCCTTCGTGATCAAAGCGTGTGGGGAGTTGTCGGATTTGGGTGAAGGGGAGAGGG TTCACGGCAAGGTGATTAAGCTCGGGTTGGATATGGACGTGTACGTGTGTAACTTTCTTGTGGAGATGTATTTCTCGTTTGGGTTGGTTGAGTCAGCGGA GAAAGTGTTTGATGGAATGCCCGTGAGAGACTTGGTTTCTTGGAACACTGTGGTTGGTGGGTGTTTGGTGGTTGGAGATGGGTTGAGGTCGTTGGTTTGG TTCAGGGAGATGGTTCGGTCGAGGGTCGGACCGGATCGGGTTAGTTTCATTAGTGCTCTTGGGGCTTGTTCTGTAGTGAGCTGTTTGAAGTCTGGGAAGG AAGTTCATTGTCAAGTGATAAGAAAAGGGATTTATTTGGATGTTATGGTTGGGACATCTCTTGTGGATATGTATGGTAAATGTGGTGAAGTTGGGTATGC GGAGAGGGTGTTCAGTGTGATCCTATTGAAAAATGCTGTTGTTTGGAATGCTCTGATGAGTGCTTATGCTACAAGTAAGAAGTACTTGCAGTCGTTGGCT TGCTTGAAAGTAATGCAAGAGGATCACACATTGGTTCCAGATTCTGTTTCCATGATAAATGTGCTCCCTTCTTGTTCGCAATTGGGAGGTCTAAAGGAGA TTAAATCCATCCATGGCTATGCAATTAGAAAGCTTCTTCTGCCTCAAATAGTTCTGGAAACTGCTCTGGTTGATGCTTATGGAAAATGTGGAACAGTGAG ATCGGCAGAGAAGCTTTTTGGGAAAATTAATAAAAAGAACTTGGTGTCATGGAACACCATGATTGCTGTTTATGTACAGAATGACAAGCATGAAGAAGCT CTTGAACTGTTTCACGACTTGTGGTGGTTGAAGAACCTTAAACCAGACGCCATCGCAGTTGCTAGCGTTCTTCCTGCCTATGCTGAACTAGATTCGTTAA GCGAGTGCAAGCAGATCCACGGTCACGTTGTGAAACTCGGTTTAAATACCGTACTTTACAATGCTCTTATTCATGCTTATGCAAAATGCGGGGACCTCCA GACCGCAAGGACGATTTTTGATGGAATGTCGGGTAAGAACTCGGCTTCGTGGAACACTATGATATTGGCTTATGCTATGCATGGATATGGGGAAACTGCT ATCAACTTGTTCTCATCCATGAAGGACAGCGGTATTGAACCGGATCATGGAACTTTCGTTTCCCTGTTGTATGCTTGCAGCATTTCTGGCCTGGTGAACA AGGGTTGGGAATTCTTCAATGCAATGAAACCCGACTACAATATTGATCCAGGGGTTGAGCATTATGGCTGTGTGGTAGATTTTCTCGGAAGTTCCGGAGA TCTCAATGCAGCGAAGGAGTTCATCAAAGGGATCCCATTGGTGGCACAAACTGCAGCAAGAATCTGGGGTTCATTACTAGCTGCAAGCAGGAACAACAAT GACCTGGAGTCAGCTGAACTAGCTGCCAAGGAAATCTTGTCTCTTGAACATGACAACACCGGTTGCTATATCTTGCTTTCAAAGATGTACGTTGAAGCCG GGAGGTCAGACGATGTGAACAGGATTAAATCTCTGATGAAGGAGAAAGGGCTAAAGAAAACAAATGGATGTTGCAAAGTAGAGACTGAAGAACGTAAGAG CCAGAGGTTCATTAACAATGGCAAGACCAACCCACAGACAAACATGATCATTGAGGTCCTAGATGTGATGTTAAAGAAAACAGGGGAGGAAAGCATCCAT GCCTATTCGTGTTCTAAGTTCATACCAGCGGACTTGATAAAGAAGGGAGCCAATTCACCGAAGCTTCACAGTGTCAAACTTGCTATCGGCTTTGGCTTGA TATCAACAGCTGTTGGGAAGCCTGTTATCATCAGAAAGAACCTTAGAGTCTGCCAAGATTGCCATCAGGTAGCGAAGAAGATCTCTCTAGCTTCTAACAG AGAGATAATGATTAGAGATCCGAAAGTTTTCTACCGTTTCAATGGTGGGGGTTGTTCTTGTGGGGATTACTGGTAG
AA sequence Show only first row Show all	>Lus10003233 pacid=23182529 polypeptide=Lus10003233 locus=Lus10003233.g ID=Lus10003233.BGIv1.0 annot-version=v1.0 MAAILRSCCCNNSFKPIENPTKQSKAIKQAQIPPRSAKSSWSKPNSLGLTRSLTAVVDSGSMDTALKLFDKMNHSDTFIWNVMIRGFTRNGLFSEAVYFH RRMERDRVRIDHFTFPFVIKACGELSDLGEGERVHGKVIKLGLDMDVYVCNFLVEMYFSFGLVESAEKVFDGMPVRDLVSWNTVVGGCLVVGDGLRSLVW FREMVRSRVGPDRVSFISALGACSVVSCLKSGKEVHCQVIRKGIYLDVMVGTSLVDMYGKCGEVGYAERVFSVILLKNAVVWNALMSAYATSKKYLQSLA CLKVMQEDHTLVPDSVSMINVLPSCSQLGGLKEIKSIHGYAIRKLLLPQIVLETALVDAYGKCGTVRSAEKLFGKINKKNLVSWNTMIAVYVQNDKHEEA LELFHDLWWLKNLKPDAIAVASVLPAYAELDSLSECKQIHGHVVKLGLNTVLYNALIHAYAKCGDLQTARTIFDGMSGKNSASWNTMILAYAMHGYGETA INLFSSMKDSGIEPDHGTFVSLLYACSISGLVNKGWEFFNAMKPDYNIDPGVEHYGCVVDFLGSSGDLNAAKEFIKGIPLVAQTAARIWGSLLAASRNNN DLESAELAAKEILSLEHDNTGCYILLSKMYVEAGRSDDVNRIKSLMKEKGLKKTNGCCKVETEERKSQRFINNGKTNPQTNMIIEVLDVMLKKTGEESIH AYSCSKFIPADLIKKGANSPKLHSVKLAIGFGLISTAVGKPVIIRKNLRVCQDCHQVAKKISLASNREIMIRDPKVFYRFNGGGCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10003233 [exp]	0	1
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006175 [exp]	1.4	0.8800
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10020593 [exp]	4.0	0.8138
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	4.7	0.8531
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004696 [exp]	6.9	0.8213
AT3G01360			Family of unknown function (DU...		Lus10013105 [exp]	7.7	0.7818
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	10.4	0.8249
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	16.1	0.8347
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10015183 [exp]	17.7	0.8040
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	21.3	0.8209
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	22.0	0.8494

Compare expression of checked genes

Lus10003233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.