Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38650 582 / 0 GAUT7, LGT7 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) AT3G61130 273 / 1e-81 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 269 / 9e-81 GAUT4 galacturonosyltransferase 4 (.1) AT2G30575 264 / 6e-79 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 251 / 2e-74 GAUT6 galacturonosyltransferase 6 (.1.2) AT4G38270 238 / 1e-68 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 220 / 2e-63 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT1G18580 203 / 4e-57 GAUT11 galacturonosyltransferase 11 (.1) AT3G25140 194 / 1e-53 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G20810 186 / 5e-51 GAUT10, LGT4 galacturonosyltransferase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035615 [exp] 1088 / 0 AT2G38650 658 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Lus10038739 [exp] 279 / 7e-84 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 255 / 6e-75 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 254 / 2e-72 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10036540 [exp] 250 / 2e-72 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 245 / 1e-71 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10013832 [exp] 243 / 1e-67 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013506 [exp] 217 / 3e-62 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10007979 [exp] 214 / 4e-61 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143966 [exp] 665 / 0 AT2G38650 620 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Potri.006G114300 [exp] 660 / 0 AT2G38650 626 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Potri.014G073800 [exp] 272 / 3e-81 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.016G001700 [exp] 271 / 5e-81 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 268 / 1e-79 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 265 / 1e-78 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 243 / 3e-71 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.005G218900 [exp] 231 / 9e-67 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.015G060800 [exp] 204 / 2e-57 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.012G064500 [exp] 196 / 1e-54 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10003235 pacid=23182512 polypeptide=Lus10003235 locus=Lus10003235.g ID=Lus10003235.BGIv1.0 annot-version=v1.0 ATGAAAGGCGGGGGCTCATCCGCGGCTTTGGGTTATCCGGCGAAAAGGCGGTGGCGATGTTTGGCGATGGGAGTGCTCTTTCTCGTTGTGCTTTCTATGC TTGTTCCCCTCGTCTTCTTGCTCGGCCTTTACAATGGTTTTCACCCCACCGGATACATATCCGATCAACAGAGGCCTAGTTCCGCTTCCGATGACATTGT AGCTGAGCATGGACGTAATATCTCTGATGTTCAACATCACTCCGAGAGGGATACATCCAGCCACGTAGACAAGGTTATCAAAAGACTTGTACCAACTCTT CCCAAGGATATTGTTAAAAACCATCCAAACAATGAGAAGAATGGAACTATCCAGATGGGTTCTTCTGGCGGCGGACCTGGAAAAGCAGGTTTACAGAGCC CACCAACCAGTCAAAAACTACCCCCCAGCAAACCTAGTAAGAGCGTTGGTGGTGGTATTGAAGTTCATAAAAACAGAAGTACTGTAGTAGACCAACGTGT GAGGCTTTGTGAGCTCAGTTTTGGGAGCTATTGTCTCTGGCTGGAAGAAAATAGAGAAGATATGAAGGATCTCATGGTGAAAAAACTGAAGGATAGGCTG TTTGTGGCTCGATCTTATTTTCCTAGCATAGCTAAACTTCCAGCACAGAGTAAGCTTTCTCATGAGTTAAAACAAAATATCCAAGACCTGGAAAAGATAC TTAGCGAGAGTTCAACTGACCCTGATCTTCCACCATTTATTGAGAAAAAACTTCTGCGGATGGAAGCTGCAATATCCAAGGCACAGTTAGTTCCTGCTGT GGAGTGTAGTAATGTTGATAAGAAATTGAGACAGATACTTGACTTGACGGAGGATGAAGCGAACTTTCACATGAAGCAGAGTGCATTTCTCTACCAACTT GCAGTCCAGACTATGCCTAAGAGCCATCATTGTCTGCTTATGAGATTGACAGTTGAATATTTTAAATCATCTCTATATGCTACCAAGATTGCTCACCCTG AGAAGTACTCGGATCCAACGCTGCAGCATTACGTTATACTGTCCAAAAATGTCCTGGCATCATCAGTTGTGATCAACTCCACCGTTTCTCATTCTAAAGA AACTGGAAATCTGGCTTTCCATGTGCTGACAGATGCTCAGAACTATTTTGCAATGAAACACTGGTTCCTCAGAAACATGTACAAAAAAGCAGTTGTGGAA GTGATTAATATTGAAGATCTTAGCCTGGATAATGAAATGTCAGCTCTTTCAAGTCTTTCTTTGCCGGTGGAATTTCGTGTTACCTTACACAGTAGCTACA ATCCACCTGAAAACCATTTGAGGACTGAATACCTATCTGTTTTTTCTCATTCTCACTATCTTCTTCCATACATATTTCCAAAATTGAAGAGGATAGTGGT TCTGGATGACGATGTTGTTGTCCAGAGAGATCTGACGGAGTTGTGGAGTCTGAAGATGGGAGGAAAGGTAGTCGGTGCTTCACAGTTATGTTCGGTGCGG CTAGCTGAGCTTAGCAATTTGTTTGGCGACAGCAGCTTTGACCGAAACTCTTGCACTTGGATGTCTGGTTTAAATGTCGTCGATTTAGTCCGATGGAGAG AGCTGGGTCTTACTAATGTTTACCAGAAGTTCAGCCAAGAGACTGTCTTATTTCTTGGATATACTGGTCAGAAGTTAACTCTATATCAGTTGCAGGCCAA AGGGACGGGATCAGCTGAAGCTGTTGCATTGCGTGGAAGCTTGCTTGCGTTTCGAGATATGATATATCCCCTTGATGATTCATGGGTTTTGTCTGGATTA GGTCATGAACATGGATTCGACCTCCAGAGAACTAAAAATGCTGCAGTGCTACACTATAACGGAAACTTGAAACCTTGGCTGGAATTGGGAATCCCCAAGT ATAAACGCCATTGGCAGAGGTTTGTCGGACCTCAAACTGAGCGGGTTACGGGTTGGGCAGATCACGAGTTAGTCGAGTTATGGGTTGATCAGGTACGGGT TGGGCGGGCTACAAACTGTGACTTTTTGTTCAACCATATTCTTGAAGGAATGCAGTATGCATCTATATTTTCAGTATGGACATTGAAGGGCCTAAAGAAG CCCAAACAGAACTGGGCATAG
AA sequence Show only first row Show all	>Lus10003235 pacid=23182512 polypeptide=Lus10003235 locus=Lus10003235.g ID=Lus10003235.BGIv1.0 annot-version=v1.0 MKGGGSSAALGYPAKRRWRCLAMGVLFLVVLSMLVPLVFLLGLYNGFHPTGYISDQQRPSSASDDIVAEHGRNISDVQHHSERDTSSHVDKVIKRLVPTL PKDIVKNHPNNEKNGTIQMGSSGGGPGKAGLQSPPTSQKLPPSKPSKSVGGGIEVHKNRSTVVDQRVRLCELSFGSYCLWLEENREDMKDLMVKKLKDRL FVARSYFPSIAKLPAQSKLSHELKQNIQDLEKILSESSTDPDLPPFIEKKLLRMEAAISKAQLVPAVECSNVDKKLRQILDLTEDEANFHMKQSAFLYQL AVQTMPKSHHCLLMRLTVEYFKSSLYATKIAHPEKYSDPTLQHYVILSKNVLASSVVINSTVSHSKETGNLAFHVLTDAQNYFAMKHWFLRNMYKKAVVE VINIEDLSLDNEMSALSSLSLPVEFRVTLHSSYNPPENHLRTEYLSVFSHSHYLLPYIFPKLKRIVVLDDDVVVQRDLTELWSLKMGGKVVGASQLCSVR LAELSNLFGDSSFDRNSCTWMSGLNVVDLVRWRELGLTNVYQKFSQETVLFLGYTGQKLTLYQLQAKGTGSAEAVALRGSLLAFRDMIYPLDDSWVLSGL GHEHGFDLQRTKNAAVLHYNGNLKPWLELGIPKYKRHWQRFVGPQTERVTGWADHELVELWVDQVRVGRATNCDFLFNHILEGMQYASIFSVWTLKGLKK PKQNWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10003235 [exp]	0	1
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	2.4	0.9306
AT5G38880			unknown protein		Lus10005085 [exp]	5.3	0.8888
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	6.2	0.9095
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	7.3	0.9042
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	8.4	0.8954
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	9.6	0.8989
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	13.0	0.8877
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	13.2	0.8928
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	14.8	0.8604
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	15.8	0.8758

Compare expression of checked genes

Lus10003235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.