Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38620 478 / 2e-170 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 470 / 2e-167 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G20930 360 / 3e-124 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 358 / 2e-123 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G48750 295 / 5e-99 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G67580 220 / 3e-65 CDKG;2 Protein kinase superfamily protein (.1.2) AT5G10270 210 / 2e-63 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 209 / 9e-63 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT1G18040 200 / 1e-60 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT5G63370 202 / 2e-60 CDKG;1 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035614 [exp] 575 / 0 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2) Lus10021611 [exp] 358 / 5e-123 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040593 [exp] 357 / 8e-123 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038755 [exp] 298 / 2e-100 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10038754 [exp] 266 / 7e-88 AT3G48750 407 / 2e-144 cell division control 2 (.1) Lus10015816 [exp] 219 / 2e-64 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 218 / 5e-64 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026790 [exp] 206 / 2e-61 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 204 / 5e-61 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113200 [exp] 502 / 5e-180 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.016G142800 [exp] 498 / 2e-178 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 366 / 1e-126 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G003400 [exp] 361 / 3e-124 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.004G133500 [exp] 306 / 4e-103 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.010G056900 [exp] 219 / 1e-64 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 214 / 7e-63 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G024600 [exp] 208 / 3e-62 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.015G092100 [exp] 211 / 9e-62 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G003700 [exp] 206 / 2e-61 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003236 pacid=23182520 polypeptide=Lus10003236 locus=Lus10003236.g ID=Lus10003236.BGIv1.0 annot-version=v1.0 ATGGAGAAATACGAGAAGCTAGAGAAGGTCGGGGAAGGCACATACGGCAAAGTCTACAAGGCGAAGGACAAAGTGACTGGGCAGTTGGTGGCTCTGAAGA AAACACGGCTGGAGATGGACGAGGAAGGCATCCCTCCGACTGCTCTCCGTGAAGTCTCTTTACTTCAGATGCTGTCTCAGTCTCTCTACGTCGTCCGCCT CCTCTCCGTCGAGCACGTCGACGCCGCCGGAAATTCCAGTCCTCTCATCGACAGCGACGACCGCCGCCACAATAGCAACAAACAAAACGCTCCTTCCAAT CCGAAATCCAATCTTTACCTAGTCTTTGAGTATCTGGACACCGATCTGAAGAAGTTTATCGATACCTACCGTAAGGGCCCTAATCCGAGGCCTCTCCCTC CTGCTCTGATCCAGAGCTTCCTCTTCCAGCTCTGCAAGGGCGTCGCTCACTGCCACAGCCACGGCGTTCTCCACCGCGATCTCAAACCTCAGAATCTTCT CCTCGACCAGGACAAGGGAATTCTTAAGATCGCTGATCTTGGTCTCGGCCGCGCCTTCACCGTCCCTCTCAAGAGCTACACTCATGAGATCGTCACACTC TGGTACAGGGCCCCTGAGGTCTTACTCGGGTCGACTCATTACTCTACCGCAGTTGATATGTGGTCCGTTGGCTGCATCTTTGGTGAAATGGTGAGACGGC AAGCCCTGTTTCCTGGCGACTCCGAGTTCCAACAGTTGCTCCACATTTTCAGGCTTTTAGGAACACCAACTGATAAAGAATGGCCAGGGGTTACTTCCCT TAGAGACTGGCATGTTTACCCGCGATGGGAACCACAAAACCTAGCTCGGGCAGTTCCTTCTCTTGATTCAGACGGGCTGGATCTTCTCTCGCCTGGGTGG CTTGTGGTGATAGTAATACCCAATGTTGTTATGACCAGACCGAATGCCGGCCTGACTAACGATTCTAAGGTTCTTTCAACAAGAGCTTACAAATATCCCA TTTGCACCGCTGGAGCTTCTCCGTTCCGAACGACTGAAAGCCGTGTTTGTAGGTACAATGCCAAGGAGTTATGCACGAACAGAGCAGATCTACTTGACTT GACTTTCCCAACTGAACCTCGTCTCAGCTAA
AA sequence Show only first row Show all	>Lus10003236 pacid=23182520 polypeptide=Lus10003236 locus=Lus10003236.g ID=Lus10003236.BGIv1.0 annot-version=v1.0 MEKYEKLEKVGEGTYGKVYKAKDKVTGQLVALKKTRLEMDEEGIPPTALREVSLLQMLSQSLYVVRLLSVEHVDAAGNSSPLIDSDDRRHNSNKQNAPSN PKSNLYLVFEYLDTDLKKFIDTYRKGPNPRPLPPALIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQDKGILKIADLGLGRAFTVPLKSYTHEIVTL WYRAPEVLLGSTHYSTAVDMWSVGCIFGEMVRRQALFPGDSEFQQLLHIFRLLGTPTDKEWPGVTSLRDWHVYPRWEPQNLARAVPSLDSDGLDLLSPGW LVVIVIPNVVMTRPNAGLTNDSKVLSTRAYKYPICTAGASPFRTTESRVCRYNAKELCTNRADLLDLTFPTEPRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10003236 [exp]	0	1
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	1.4	0.9662
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10019316 [exp]	2.8	0.9658
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	4.2	0.9627
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	4.5	0.9485
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	5.3	0.9430
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	6.7	0.9301
AT1G65710			unknown protein		Lus10010952 [exp]	10.7	0.9473
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10012608 [exp]	12.0	0.9132
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	12.7	0.9440
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	14.1	0.9426

Compare expression of checked genes

Lus10003236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.