Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54190 741 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G38630 712 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035613 [exp] 845 / 0 AT3G54190 754 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142600 [exp] 741 / 0 AT3G54190 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G113000 [exp] 734 / 0 AT3G54190 814 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G064100 [exp] 704 / 0 AT3G54190 812 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091700 [exp] 687 / 0 AT3G54190 764 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091800 [exp] 629 / 0 AT3G54190 722 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091600 [exp] 265 / 6e-87 AT3G54190 338 / 8e-116 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003237 pacid=23182513 polypeptide=Lus10003237 locus=Lus10003237.g ID=Lus10003237.BGIv1.0 annot-version=v1.0 ATGATGATTGAGGGCAGGAGAATCTCCGCCAATCCCAGGCCTTGCTCCGGTAGGAGAGTGTTGGCTAGGAAGCGGCCTCGAGTTGAAGGACTCCTTAATA CGGTGAAGAAACTTCACCGCCGAGAGATTTCCTCCAAGCGGGATCGTGCTTTCACTATGAGCAATGCCCAGGAGAGATTCCGCAACATGCGTTTGATGGA AGAGTACGACACCCATGACCCAAAAGGCCATTGCTCAGTGGTACTTCCTTTCTTGATGAAGAGAACTAAAGTAATAGAGATAGTTGCTGCTCGTGATATT GTATTTGCTCTTGCACATTCTGGTGTATGCGCAGCCTTTAGTAGAGGTAGGACTATCAAATGTCTTCAAACCCTTTGTGTATCATTTCTTTCTTTGGTGG CATTTTCTTCTAATCTGTTCTTTTCTCGGTTGAATTCAGAGACAAATCAGAGGATATGTTTTCTAAACGTAAGTCCTGATGAGGTTATCCGAAGCTTGTT TTATAACAAGAACAACGATTCCCTTATCACAGTTTCGGTATATGCCTCTGACAATTTCAGCTCCTTAAAATGCAGATCAACACGAATTGAGTACATACGT AGGGGCCAGCCCGATGCAGGGTTTGCCCTCTTTGAATCCGAGTCCTTGAAGTGGCCTGGATTTGTTGAATTTGACGACGTTAATGGAAAAGTGCTTACTT ACTCGGCACAAGACAGTCCGGGGATCATGCTGTTGATTTTCAATAGATCAAGCAGCCACGTTCCTCTGAAAATTTTATCAATCGAAGATGGTACAGTTCT CAAATCATTCAACCACCTGCTTCATCGAAATAAGAAGGTTGACTTTATTGAACAATTCAACGAGAAACTTCTTGTGAAGCAAGAAAATGAGAATCTCCAA ATTCTTGATGTTCGAAATGCTGAGCTGATTGAAGTCAGCAAAACTGAATTCATGACTCCATCTGCATTCATCTTTTTGTACGAGAACCAGCTGTTCTTAA CATTCAGAAATCGGACAGTTGCTGTCTGGAACTTTCGTGGGGAGCTTGTAACATCTTTTGAGGATCACCTGTTGTGGCACCCCGACTGCAACACCAATAA CATATACATAACAAGTGATCAAGATCTTATTATTTCATACTGCAAGGTTGAATCTGAGGATCAATGGATGGAAGCAAATGGGAAGTGTTTGGCTAAAATA AACGCTTCAACTGGAAGTCCAAAGATAGATGATAAGAGTAGTAGTAGTAGTAGTGGGTCAACTCAGCGGCAAACATTGATGAGAAGTACGGCAGGGGAAG CACTCGAAGATATAACTGCGCTTTTCTACGATGAAGAACGCAACGAGATCTATACTGGGAATAGGCATGGCCTGGTCCACGTATGGTCCAACTAA
AA sequence Show only first row Show all	>Lus10003237 pacid=23182513 polypeptide=Lus10003237 locus=Lus10003237.g ID=Lus10003237.BGIv1.0 annot-version=v1.0 MMIEGRRISANPRPCSGRRVLARKRPRVEGLLNTVKKLHRREISSKRDRAFTMSNAQERFRNMRLMEEYDTHDPKGHCSVVLPFLMKRTKVIEIVAARDI VFALAHSGVCAAFSRGRTIKCLQTLCVSFLSLVAFSSNLFFSRLNSETNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIR RGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSPGIMLLIFNRSSSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ ILDVRNAELIEVSKTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKVESEDQWMEANGKCLAKI NASTGSPKIDDKSSSSSSGSTQRQTLMRSTAGEALEDITALFYDEERNEIYTGNRHGLVHVWSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	0	1
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	1.0	0.8919
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10043188 [exp]	1.7	0.8673
AT3G22520			unknown protein		Lus10006124 [exp]	2.2	0.8484
AT1G47570			RING/U-box superfamily protein...		Lus10020903 [exp]	5.0	0.8108
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	5.3	0.8868
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10014552 [exp]	6.9	0.8418
AT1G27170			transmembrane receptors;ATP bi...		Lus10004905 [exp]	7.7	0.8316
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003922 [exp]	8.4	0.8417
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	8.5	0.8390
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10035091 [exp]	9.8	0.8647

Compare expression of checked genes

Lus10003237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.