Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 130 / 3e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 75 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 73 / 1e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 66 / 7e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64450 44 / 4e-05 Glycine-rich protein family (.1) AT2G01080 44 / 5e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 41 / 0.0002 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035612 [exp] 358 / 1e-126 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 218 / 7e-72 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 215 / 5e-71 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 197 / 2e-63 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 196 / 6e-63 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 94 / 1e-23 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 94 / 2e-23 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 93 / 3e-23 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 91 / 2e-22 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142300 [exp] 194 / 2e-62 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 185 / 7e-59 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 98 / 4e-25 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 89 / 1e-21 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 82 / 3e-19 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 72 / 3e-15 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 68 / 1e-13 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 65 / 6e-13 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G055000 [exp] 57 / 1e-09 AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.003G021934 [exp] 51 / 1e-07 AT2G01080 249 / 2e-83 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10003238 pacid=23182516 polypeptide=Lus10003238 locus=Lus10003238.g ID=Lus10003238.BGIv1.0 annot-version=v1.0 ATGGAAGTGGAAGCCTTAAATCAGTCATCGCCGTCAACAAAGCCTCCGAATGCACAGCAGAGCACAACGGCGGACTACAACCGCGGCGGTCCATTTGCAG CCACCACTGGCACTAAGAAGAAGAAGCTCAAACGTAGAAGAAACATATGTTTATTAACCACTGCAGCCGTAATCATCCTGCTCATCCTCATCGCCCTCAT CTTATCCCTCACCGTTTTCAAGGCCAAGCGTCCCGTCATCACCGTCAACAACGTCATCCTCGACGACCTCAACTTCTCCTTGGATCTCGCCAGGCTCGCC GTCCACCTCAACCTAACCCTCGACCTATATATCACCGTCAGAAACCCCAACAAGGTGGGCCTGAAATTCTCCAACTCCTCCGCCTCCCTCAGTTACAGAG GACTGGGAGTCGGACAAGTTCCCATACCCGCCGGCCGTGTCTCTGCCGATTCAAATACCGCTTTCAACTCCACCCTTACCCTCATGGCTGATCGGCTCTT CTCCAACTCTCAGCTCTTCTCCGATATCATCTCTGGGGGAGGCGCCATCCCTTTCAACACCTATGCCAAGATCAAGGGTAAAGTCTCTGTTTTTAAGCTC TTCAATGTCCGCGTCACTTCAACCTCCACGTGTGAGTTTACTGTCTTCCTACAGAACCGGACAATTGGGGATCAAACCTGCAACTACAAGACTAAACTGT AG
AA sequence Show only first row Show all	>Lus10003238 pacid=23182516 polypeptide=Lus10003238 locus=Lus10003238.g ID=Lus10003238.BGIv1.0 annot-version=v1.0 MEVEALNQSSPSTKPPNAQQSTTADYNRGGPFAATTGTKKKKLKRRRNICLLTTAAVIILLILIALILSLTVFKAKRPVITVNNVILDDLNFSLDLARLA VHLNLTLDLYITVRNPNKVGLKFSNSSASLSYRGLGVGQVPIPAGRVSADSNTAFNSTLTLMADRLFSNSQLFSDIISGGGAIPFNTYAKIKGKVSVFKL FNVRVTSTSTCEFTVFLQNRTIGDQTCNYKTKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	0	1
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	1.4	0.9626
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	2.4	0.9361
					Lus10007554 [exp]	2.8	0.9416
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	3.3	0.8858
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	4.0	0.8704
					Lus10021894 [exp]	4.0	0.9290
					Lus10018224 [exp]	5.9	0.9044
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	6.5	0.9039
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	7.3	0.8649
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	8.4	0.8978

Compare expression of checked genes

Lus10003238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.