Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20780 214 / 3e-71 CML42 calmodulin like 42 (.1) AT5G44460 182 / 8e-59 CML43 calmodulin like 43 (.1) AT2G43290 98 / 3e-25 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G59440 88 / 9e-22 Calcium-binding EF-hand family protein (.1) AT1G05990 86 / 2e-21 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G03290 86 / 3e-21 EF hand calcium-binding protein family (.1) AT4G14640 74 / 7e-17 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT5G37780 74 / 1e-16 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 74 / 1e-16 ACAM-4, CAM4 calmodulin 4 (.1.2) AT1G24620 74 / 1e-16 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035611 [exp] 313 / 3e-110 AT4G20780 242 / 3e-82 calmodulin like 42 (.1) Lus10021134 [exp] 229 / 1e-76 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10017174 [exp] 223 / 1e-74 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10000972 [exp] 90 / 2e-22 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10027701 [exp] 86 / 2e-20 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10039391 [exp] 80 / 4e-19 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10028657 [exp] 80 / 1e-18 AT1G21550 122 / 9e-36 Calcium-binding EF-hand family protein (.1) Lus10006644 [exp] 79 / 5e-18 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10038088 [exp] 78 / 1e-17 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112500 [exp] 228 / 1e-76 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.016G142000 [exp] 224 / 9e-75 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.002G077300 [exp] 97 / 2e-25 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1) Potri.005G183300 [exp] 95 / 1e-24 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 95 / 4e-24 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 89 / 8e-22 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.006G065900 [exp] 83 / 3e-19 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.008G159300 [exp] 80 / 4e-19 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 79 / 2e-18 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.002G239100 [exp] 77 / 1e-17 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10003239 pacid=23182524 polypeptide=Lus10003239 locus=Lus10003239.g ID=Lus10003239.BGIv1.0 annot-version=v1.0 ATGGAAGATCCATCGGCAACATCAGCAGGATCGCCGCGAAAGTTTAAGAGCGCCTCGCGCTCCTCATCCTTTCGGCTGAGATCCCCGAGCCTTAACTCCT TGCGTCTCCGCCGCATTTTCGACATATTCGACAAGAACGGAGACGGGATGATTACAGTGCATGATATGAACCAGGCTCTAACCCTATTGGGCCTGGATGC CGACCTATCCGAGCTGGAATCTACCATCAAGGCCCATATCAAGCCAGGGAACGAGGGCCTTGAGTTCGAGGACTTTATGTCCCTCCACCAATCGCTAGAC GACGCACTATTTGGCGGGGGACAACATCCACAACATGACGACGACAGCGAATCGAAGATGGATAAAATGACGCAGGAGGAGTCGGATCTATCTGAGGCAT TCAAGGTGTTCGATGAAGACGGCGACGGCTACATCTCCGCCGACGAGTTGCAAGTGGTTTTGCGGAAGCTGGGCTTGCCGGAGGCCACCGATATCGATAG AGTCCAACAGATGATCGTCTCTGCTGACCGTAACCGCGACGGTCGTGTCGATTTCTTTGAATTTAAAGATATGATGCGCTCTGTTCTCATCCCTACCTCC TAA
AA sequence Show only first row Show all	>Lus10003239 pacid=23182524 polypeptide=Lus10003239 locus=Lus10003239.g ID=Lus10003239.BGIv1.0 annot-version=v1.0 MEDPSATSAGSPRKFKSASRSSSFRLRSPSLNSLRLRRIFDIFDKNGDGMITVHDMNQALTLLGLDADLSELESTIKAHIKPGNEGLEFEDFMSLHQSLD DALFGGGQHPQHDDDSESKMDKMTQEESDLSEAFKVFDEDGDGYISADELQVVLRKLGLPEATDIDRVQQMIVSADRNRDGRVDFFEFKDMMRSVLIPTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10003239 [exp]	0	1
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	1.7	0.8650
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	6.7	0.7854
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	13.5	0.8037
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10016528 [exp]	13.7	0.7916
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10024334 [exp]	14.4	0.8384
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002995 [exp]	19.3	0.7590
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	23.2	0.7664
					Lus10041665 [exp]	35.3	0.7813
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	40.6	0.7351
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10001383 [exp]	49.2	0.7098

Compare expression of checked genes

Lus10003239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.