Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01990 591 / 0 Auxin efflux carrier family protein (.1) AT1G71090 282 / 1e-87 Auxin efflux carrier family protein (.1) AT1G76520 209 / 4e-61 Auxin efflux carrier family protein (.1.2) AT1G20925 197 / 7e-56 Auxin efflux carrier family protein (.1) AT2G17500 196 / 8e-56 Auxin efflux carrier family protein (.1.2.3.4) AT5G65980 191 / 5e-54 Auxin efflux carrier family protein (.1) AT1G76530 152 / 4e-40 Auxin efflux carrier family protein (.1) AT1G30050 132 / 3e-33 unknown protein AT5G01970 120 / 1e-29 unknown protein AT2G30530 110 / 9e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035610 [exp] 766 / 0 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 187 / 1e-52 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10035609 [exp] 184 / 3e-52 AT1G30050 187 / 5e-56 unknown protein Lus10001303 [exp] 183 / 3e-51 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10036000 [exp] 179 / 1e-50 AT1G71090 486 / 3e-172 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 181 / 2e-50 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10016704 [exp] 179 / 2e-50 AT1G71090 481 / 2e-170 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 180 / 3e-50 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 178 / 4e-49 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112200 [exp] 622 / 0 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.016G141700 [exp] 606 / 0 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.008G127700 [exp] 271 / 2e-83 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.004G093200 [exp] 270 / 7e-83 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 266 / 9e-82 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 266 / 2e-81 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.005G099300 [exp] 213 / 5e-62 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.003G108100 [exp] 199 / 8e-57 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 183 / 4e-51 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.002G003500 [exp] 181 / 2e-50 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10003240 pacid=23182535 polypeptide=Lus10003240 locus=Lus10003240.g ID=Lus10003240.BGIv1.0 annot-version=v1.0 ATGTCGCATTCGCACGCCGTCCATAGATTGTTGTCGGCGATCCAAGATGAAGCTCCCATGGGAGGACAGTCAGTCCTCGATTCCATCAAAATCGCAGTTC TTCCAATCGCCAAAGTCTTCACGATGTGCTTCTTGGGATTTCTTATGGCCTCCAAGTACGTCAACATCTTGCCCGCCTCCGGGAGGAAACTCTTGAACGG GTTGGTCTTCTCGCTTTTGCTACCTTGCTTAATCTTCTCGCAACTCGGCCAAGCTGTCACGTTGCAGAAGATGCTGCAGTGGTGGTTCATTCCGGTCAAC GTTGTCCTGGGCAGCATCTCTGGCTCACTCATTGGATTCATCGTTGCATCCATAGTTCGACCTCCCTACCCGTTTTTTAAGTTCACAATCGTACATATTG GAATTGGGAACATCGGCAATGTGCCCCTTGTCTTGATCGCTGCTCTATGTAGAGATCCATCCAACCCTTTCGGTGACTCGGAAAAATGTAGCACAGATGG GACTGCTTATATTTCATTTGGCCAGTGGGTTGGTGCGATCATCCTTTACACATATGTATTCAACATGCTGGCACCTCCTCCAGAAGGCACCTTTGATATG GAAAATGTGAACTTCTCAACCAAGAGTTCTCTAAAAGATTCTTCACCTGAGCGAATTCCTTTAGTTGCCCATGAGAATTTAGTCAAAGATACAAGTGCTT CAAAGCAACAAAAGATTATGGACTTTCTGGTTCTCCTATGTGAGAAACTGAAGCTGAAGCAAATCCTTCAACCGGCTATAATTGCTTCAATCTTAGCCAT GGTTCTGGGCGCAGTACCATTCTTTAAGCGACTGATTTTCACAACTGATGCACCGCTGTTCTTTTTTACCGATAGCTGCATCATTCTTGGGGAAGCTATG ATCCCGTGCATATTGTTGGCTTTAGGTGGCAATCTCGTTGATGGGCCAGGAAGCTCTAAACTCGGTCTACGAACAACCGCTGCGATTATTTTTGCGCGGT TGGTTCTGGTACCGCCCGCTGGCTTAGGAATTGTTACATTGGCCGATAAGCTGGGTTTCCTTCATGCTGATGATAAGATGTTCCGGTTCGTGCTACTTCT ACAGCACACAATGCCAACATCTGTCCTTTCTGGTGCAGTTGCGAGTCTAAGGGGTTGTGGGAAGGAAGCTGCTGCTGTGTTTGATGCTTACGAAGATAAC TCGCCGAGGAGCCCTTCGAATACTATATGGGACGCTCTTACACGGAAAGCCAAAACTATTTTAGAAGAGGACGATGCCCCAGCCGACGTCAACGTCCATC ACAAAACCGACGAGGACGTCGACGATCATCATCGTCGTCATGATCACAACGACGACAATGTAAATATTGTTGTATCTCCACGGTCCCCTATTACGCCAAC CACGTCCAGGTTCGAATTGTCCACTACTGGTATCTCCATGGCTCCTCCTCCTACTATCCACCAGGTGGCAATGGCGACTGCAGCAAAAGCAAAACTACTT CTACGGGAACTGAAAACGGTGAAGGCGGACTTGGCATTTGCAAAACAAAGATCCTCCCAGCTAGAACAGGAGAATGCTCTTTTGAGAGAGAGCCGAGACA AGGGCACTGGAAATAACCCAGCTGATGATGAACTGATACGTCTACAATTGGAGACACTATTGGCAGAGAAGGCACGACTGGCGAACGAGAATGCATTCTA TGCTCGAGAGAACTGTTACCTGCGAGAAATCGTGGAGTATCACCAGCTCACGTTGATGCATCATGACATGGTTTACTTGGACGACGATTATGAAGACTAC GAAGAAGAAGGAGAAGAAGAAGGAGGTGGTGATCAAGAAGTCGTAGTGTACCCTGCAGCCAATATGAACATGTCTCCCCCTCCCTTGTCGCCTATAACCC CACCTGCTTCACCTCATTATAACAGCACTACTAGTACTAATCCGAATATAGCAGCACTGAATAATGATGATCAGCAGCATGTACAAGCTGCTGCTGCTGC TGCTGTATCGAATTCCACCTCGTCAGCATCTGCTACTGATCACCACCAAGCTTCCAACCACTCTTCTACCGGACAATAA
AA sequence Show only first row Show all	>Lus10003240 pacid=23182535 polypeptide=Lus10003240 locus=Lus10003240.g ID=Lus10003240.BGIv1.0 annot-version=v1.0 MSHSHAVHRLLSAIQDEAPMGGQSVLDSIKIAVLPIAKVFTMCFLGFLMASKYVNILPASGRKLLNGLVFSLLLPCLIFSQLGQAVTLQKMLQWWFIPVN VVLGSISGSLIGFIVASIVRPPYPFFKFTIVHIGIGNIGNVPLVLIAALCRDPSNPFGDSEKCSTDGTAYISFGQWVGAIILYTYVFNMLAPPPEGTFDM ENVNFSTKSSLKDSSPERIPLVAHENLVKDTSASKQQKIMDFLVLLCEKLKLKQILQPAIIASILAMVLGAVPFFKRLIFTTDAPLFFFTDSCIILGEAM IPCILLALGGNLVDGPGSSKLGLRTTAAIIFARLVLVPPAGLGIVTLADKLGFLHADDKMFRFVLLLQHTMPTSVLSGAVASLRGCGKEAAAVFDAYEDN SPRSPSNTIWDALTRKAKTILEEDDAPADVNVHHKTDEDVDDHHRRHDHNDDNVNIVVSPRSPITPTTSRFELSTTGISMAPPPTIHQVAMATAAKAKLL LRELKTVKADLAFAKQRSSQLEQENALLRESRDKGTGNNPADDELIRLQLETLLAEKARLANENAFYARENCYLREIVEYHQLTLMHHDMVYLDDDYEDY EEEGEEEGGGDQEVVVYPAANMNMSPPPLSPITPPASPHYNSTTSTNPNIAALNNDDQQHVQAAAAAAVSNSTSSASATDHHQASNHSSTGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01990			Auxin efflux carrier family pr...		Lus10003240 [exp]	0	1
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	3.2	0.7990
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	7.5	0.7797
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10033945 [exp]	11.2	0.7826
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10024292 [exp]	20.3	0.7523
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10011525 [exp]	22.4	0.7100
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001542 [exp]	24.9	0.7900
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	25.7	0.7700
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10013469 [exp]	28.9	0.7297
AT4G16670			Plant protein of unknown funct...		Lus10007797 [exp]	31.5	0.7284
AT3G12020			P-loop containing nucleoside t...		Lus10029307 [exp]	35.5	0.6961

Compare expression of checked genes

Lus10003240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.