Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38610 463 / 1e-166 RNA-binding KH domain-containing protein (.1.2) AT3G08620 433 / 7e-155 RNA-binding KH domain-containing protein (.1) AT4G26480 273 / 2e-91 RNA-binding KH domain-containing protein (.1) AT5G56140 272 / 5e-91 RNA-binding KH domain-containing protein (.1) AT1G09660 243 / 8e-80 RNA-binding KH domain-containing protein (.1.2) AT5G51300 100 / 2e-23 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035608 [exp] 543 / 0 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 315 / 6e-108 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 315 / 8e-108 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 311 / 4e-106 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 271 / 7e-91 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 269 / 6e-90 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 261 / 2e-87 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 104 / 7e-25 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10013751 [exp] 42 / 0.0006 AT3G32940 240 / 8e-70 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111400 [exp] 509 / 0 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 493 / 2e-178 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.019G132100 [exp] 402 / 8e-143 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 402 / 1e-142 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.003G005500 [exp] 281 / 1e-94 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 280 / 4e-94 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.001G471000 [exp] 278 / 3e-93 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.004G225900 [exp] 277 / 4e-93 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.001G126400 [exp] 103 / 9e-25 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 101 / 8e-24 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10003241 pacid=23182542 polypeptide=Lus10003241 locus=Lus10003241.g ID=Lus10003241.BGIv1.0 annot-version=v1.0 ATGTCGGGTCTGTATAATCAAAACTTCTCCCCAGCAAGAGCTGCATCTCCTCAGATTAGAACCACTCCTGATGTCGACAGTCAGTACCTCTCTGACCTAC TTGCCGAGCACCAAAAGCTAGGTCCTTTCATGCAAGTTCTCCCAATATGCAGCCGACTTCTCAATCAAGAAATTTTTCGAGTTTCGGGAATGATGTCCAA CCAAGGGTTTGGTGACTTGGACCGATTGAGGCATAGAAGCCCCAGTCCTATGGGATCTTCCAACCTAATGTCCAATCCTGGAAGCGGGCTTGGTGGCTGG AATAGCCATTCACAAGAGAGATTGAGTGGACCACCTGGAATGACAATGGACTGGCAAGGTGCACCAGCAAGCCCTAGTTCATACACCGTGAAGAGAATTT TACGTTTGGAAATCCCTGTAGACACCTATCCAAACTTTAATTTTGTTGGTCGGCTTCTCGGTCCTAGAGGCAATTCTCTGAAACGGGTTGAAGCAACTAC AGGTTGTCGCGTATATATACGTGGTAAAGGATCAATCAAAGACCCGGACAAGGAGGAGAAGCTGAGAGGAAGACCAGGCTATGAGCACCTGAATGATCCA CTTCACATCTTGATCGAAGCTGACTTGCCCGCAAATATTGTGGATATTAGGCTGAGACAGGCGCAAGAGATTATAGAAGAACTGCTCAAACCTGTGGATG AGTCGCAAGATTTTATAAAAAGGCAGCAGCTGCGGGAGTTGGCGATGCTGAACTCGAATTTCAGGGAAGAGAGTCCAGGGCCAAGCGGTGGCAGTGTGTC TCCCTTCAACACAAGTGGAATGAAAAGGGCGAAAACAGGACGCTGA
AA sequence Show only first row Show all	>Lus10003241 pacid=23182542 polypeptide=Lus10003241 locus=Lus10003241.g ID=Lus10003241.BGIv1.0 annot-version=v1.0 MSGLYNQNFSPARAASPQIRTTPDVDSQYLSDLLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMSNQGFGDLDRLRHRSPSPMGSSNLMSNPGSGLGGW NSHSQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDP LHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGGSVSPFNTSGMKRAKTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	0	1
AT5G08415			Radical SAM superfamily protei...		Lus10013451 [exp]	2.4	0.6786
AT2G38610			RNA-binding KH domain-containi...		Lus10035608 [exp]	2.6	0.7749
AT4G20300			Protein of unknown function (D...		Lus10036240 [exp]	6.0	0.7345
AT5G42620			metalloendopeptidases;zinc ion...		Lus10016304 [exp]	15.4	0.6753
					Lus10042539 [exp]	18.2	0.5785
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10002966 [exp]	21.5	0.5943
AT3G26700			Protein kinase superfamily pro...		Lus10002882 [exp]	25.5	0.6632
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	28.1	0.6814
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	28.2	0.6540
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036501 [exp]	30.3	0.6653

Compare expression of checked genes

Lus10003241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.