Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08640 338 / 1e-113 Protein of unknown function (DUF3411) (.1) AT3G08630 328 / 7e-110 Protein of unknown function (DUF3411) (.1) AT2G37860 102 / 2e-23 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G22790 99 / 4e-22 RER1 reticulata-related 1 (.1) AT5G12470 87 / 2e-18 Protein of unknown function (DUF3411) (.1) AT2G40400 76 / 2e-14 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G56140 76 / 3e-14 Protein of unknown function (DUF399 and DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035607 [exp] 373 / 5e-129 AT3G08640 330 / 2e-114 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 89 / 6e-19 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 88 / 1e-18 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10040960 [exp] 85 / 4e-17 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10009845 [exp] 83 / 1e-16 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10024346 [exp] 79 / 2e-16 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10010224 [exp] 81 / 1e-15 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10043364 [exp] 77 / 7e-15 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10009956 [exp] 76 / 9e-15 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111300 [exp] 363 / 3e-123 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.016G140700 [exp] 356 / 2e-120 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.016G103100 [exp] 100 / 1e-22 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G150400 [exp] 99 / 2e-22 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.001G262200 [exp] 91 / 2e-19 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 86 / 6e-18 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 84 / 2e-17 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 49 / 4e-06 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 47 / 2e-05 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10003242 pacid=23182534 polypeptide=Lus10003242 locus=Lus10003242.g ID=Lus10003242.BGIv1.0 annot-version=v1.0 ATGAATCTAGGATGGTTGCCATTTAGAACAAAGTCTAGTGATGCTTATTGGGCCCTATCAGAAAAATGGCTCTGTTGTAGTAAATTCGATGAAGCTGGAT TCAGCCAACTGCATTTATTGGGCCGGTTTTCTGGCTGTCGGCTGGACTGGGCTGGTAATCTGAGCTCAGTCACTGGCTCTCACCTACTACTACTGACAAC TGCAGGAAGCAGCTCCAGCCTCCAGAGCTCCATCGTCCGTCCAAAGAACATAGTCTTTAAACACTACCAGATTCCTGAGCTTTTCTTGCTTCCCTTCTGT TGCCGCCACTCCGATCTTCGTCCATCCATTGGTAAGTCCTCCTTCCCTCCTTCTTCATCGTCATCTTCTCTCCTCATATTGCGTGTGTCCCGGGATGGCT ACCTCCACTGCATCCTCTCTCCGCACCGCCGCTCTTCCGCGGGACAATCTCGGGGTCCTCCCCATCTCCCACTCGAAAACTCCTACTCGAATATCTCGTT CCCAACAACCCGTCGAAAATCCATCTCTTTCCGCCTCTCCCACCCTAATCTCCTCCTCAAATCTCCACCTCCTACGCCCGTATCAGCCGGTGGTGGAGGC GGAAATAGCGGAGCAGGAGGATCAGGGTGGAATGGAGGAGCTGGTGGATCGGACGGCGGTTCATCATCATCGTCATCTCCATCTGGACAGGGATTCGGGA TATTAGGTCTTTTCCTCAGCGGATGGAGAGCTAGAGTGGCTGCCGATCCGCAGTTCCCATTCAAGGTCCTGATGGAAGAGCTGGTAGGCGTATCCGCTTG CGTAGTCGGGGACATGGCTTCTCGCCCTAACTTCGGCCTCAACGAACTCGATTTCGTCTTCTCCACCTTAGTAGTCGGCTCCATTCTCAATTTCACTCTA ATGTATCTCTTAGCACCCACAGCTTTAACATCCGCTTCGGCTACTGCCCTCCCGGCAATATTCGCCAGCTGCCCCACGAGCCACATGTTCGAGCCCGGGG CATTCACTCTGATGAATCGATTGGGTACGTTTGTGTACAAAGGAACCATCTTTGCATCGGTTGGATTCTTTGCTGGGCTTGCCGGGACTGTCCTCTCGAA CGGACTGATCAAGATGAGGAAGAAGATGGATCCGAGCTTCGAGACTCCAAACAAGGCTCCTCCAACACTGCTGAATGCTGTGACGTGGGCCCTGCATATG GGGATCAGCAGCAACTTGAGGTACCAGACATTGAATGGGGCGGAGTTTGTGTTGGCGAAAGCGCTCCCTCCAGTGCCTTTCAAGACATCGGTTGTTGTGC TGAGGTGCTTGAACAATGTGCTTGGCGGGATGTCTTTTGTTTTGTTGGCTAGGCTCACTGGTGCTCAGAGTGCTTCTGCTCCTAAACCAGTTGTAGCAGT GGCGGACGAGAAGGAGAAACTGCTGGATGATTGA
AA sequence Show only first row Show all	>Lus10003242 pacid=23182534 polypeptide=Lus10003242 locus=Lus10003242.g ID=Lus10003242.BGIv1.0 annot-version=v1.0 MNLGWLPFRTKSSDAYWALSEKWLCCSKFDEAGFSQLHLLGRFSGCRLDWAGNLSSVTGSHLLLLTTAGSSSSLQSSIVRPKNIVFKHYQIPELFLLPFC CRHSDLRPSIGKSSFPPSSSSSSLLILRVSRDGYLHCILSPHRRSSAGQSRGPPHLPLENSYSNISFPTTRRKSISFRLSHPNLLLKSPPPTPVSAGGGG GNSGAGGSGWNGGAGGSDGGSSSSSSPSGQGFGILGLFLSGWRARVAADPQFPFKVLMEELVGVSACVVGDMASRPNFGLNELDFVFSTLVVGSILNFTL MYLLAPTALTSASATALPAIFASCPTSHMFEPGAFTLMNRLGTFVYKGTIFASVGFFAGLAGTVLSNGLIKMRKKMDPSFETPNKAPPTLLNAVTWALHM GISSNLRYQTLNGAEFVLAKALPPVPFKTSVVVLRCLNNVLGGMSFVLLARLTGAQSASAPKPVVAVADEKEKLLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	0	1
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	1.0	0.9682
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	1.7	0.9519
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	2.0	0.9537
AT3G12650			unknown protein		Lus10037700 [exp]	2.8	0.9255
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	3.5	0.9395
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	5.0	0.9282
AT5G57460			unknown protein		Lus10028963 [exp]	5.3	0.9260
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	6.0	0.9204
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	6.9	0.9264
AT1G53900			Eukaryotic translation initiat...		Lus10003938 [exp]	7.5	0.9110

Compare expression of checked genes

Lus10003242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.