Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08650 664 / 0 ZIP metal ion transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035606 [exp] 793 / 0 AT3G08650 822 / 0.0 ZIP metal ion transporter family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111200 [exp] 718 / 0 AT3G08650 679 / 0.0 ZIP metal ion transporter family (.1.2) Potri.016G140500 [exp] 342 / 5e-111 AT3G08650 334 / 4e-108 ZIP metal ion transporter family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10003243 pacid=23182526 polypeptide=Lus10003243 locus=Lus10003243.g ID=Lus10003243.BGIv1.0 annot-version=v1.0 ATGTCTCCACCACTCCGTATCATCATCATCCTCCTCTCCTTTATCTTATTCGCCTTTGATTTCGCCTGCTCCCAGGCGGACCATCTCCCCACTACTGTTA CTCTCCCCTCCGCACCTCATAAGAACGTCCGCAGCTCAATCATAGATGGCGCCGGCACCACTACCCATGACGAGGATTTTGACCCATCGTCAACAACCAA CCACAACAACAATCGGGTCTCAATTTCCACCGTTGCACTGTTTACCTTAGCCATGGCTGCCGCCACTGGTTTGGGTGCTCTCCCCTTCTTCTTCGTCGAG CTCGACCCCCAATGGGCTGGCTTGTGCAACGGCATGGCTGCTGGTGTCATGCTTGCTGCTAGCTTTGACCTCGTTCAGGAAGGACAGGCCCACGGCGGTG GAAGCTGGGTCATGATTGGAATCCTTTCTGGTGGCCTCTTCATTTTGCTCTGTAAGAAGTTCCTTGAACAATATGGAGAAGTAAGCATGTTGGATATCAA AGGTGCTGATGCAACTAAAGTAGTCCTTGTCATTGGAATTATGACTCTTCACTCCTTTGGAGAAGGCTCTGGAGTTGGGGTATCCTTTGCTGGCTCCAAA GGTTTCTCTCAAGGCCTTCTGGTCACTCTTGCCATTGCTGTCCACAACATACCTGAGGGATTGGCTGTCAGTATGGTGCTTGCTTCTCGCGGTGTTTCTC CTCAGAATGCAATGCTCTGGAGTGTCATCACTTCCTTGCCTCAGCCACTTGTTGCGGTTCCTTCATTCATGTGTGCGGATGCCTTCAACAAGTTCCTACC TTTTTGCACTGGTTTTGCTGCTGGATGTATGATCTGGATGGTTGTAGCTGAGGTCCTTCCAGATGCCTTCAAGGAAGCTTCTCCCTCCCATGTGGCATCC GCAGCAACAGTTTCAGTTGCATTGATGGAAGCGTTCAGTACTTTGTTCCAGAGTTTCAGCCATGACTATAACTCAGAGGACGCTTCTGGTTTCTTTGTCT CATTACTTTTCGGTCTTGGTCCACTGCTTGGTGGCATAATTCTCGTCGCATTTGCCCTTGCATTCCGTCTCCAACATGCACTCCTTATGGGCTCAGCATC CGGAATTGCTTTTGTGCTTGCTACCTGGCGACCATTACAGCTACTCGCTTCCTCAAAAATGGGATTTATACCCCTCACATTCTTACTAGCGACAGGAGCA GCATTTGTTCATTCTTTAGGCTCCATCACTTTGGGTTTAGGGGGTCGAAAGAAAGCATCAGCGAATAACTTGCCAGCCGTTTCTGGGTTCCCCGTGAGCG TTCATACTCTTCAGTCATTTCTATCATGTGGAGCAATCGGGTTGCATGCATTGGCAGAGGGACTCGCACTCGGAGTCGCTGCCCCAAAAGCTTATGGGCT TGGTCGGCACATGGTTCTTCCGGTTTCCCTGCACGGTCTCCCGAGAGGTGCAGCTGTCGCAAGCTGCATCTTAGGTGCTACCGACAGTTGGCACAGTGCA CTAGCAGCAGCTGCTTTGATCGGGTTTGTCGGTCCAATGTCAGCAATTGGATCGATACTAGCAGGAATTGACTATAGCGGTCTGGATCATGTGATGGTGT TTGCCTGTGGAGGATTGCTGCCGAGTTTTTGGAGGATCGTAAAGAGGGCTATTAGGTTGGATACGAAGAAAACAGGCGTAGGGGTGGCAGCCGGAGTTGG GTTTGCTATACTTTGTTTGACATGTACTAAACTCGTCTGCCTGCACACTCCTTATTGCAATTCCGCTCCAGAAGCAGTGAGGTGA
AA sequence Show only first row Show all	>Lus10003243 pacid=23182526 polypeptide=Lus10003243 locus=Lus10003243.g ID=Lus10003243.BGIv1.0 annot-version=v1.0 MSPPLRIIIILLSFILFAFDFACSQADHLPTTVTLPSAPHKNVRSSIIDGAGTTTHDEDFDPSSTTNHNNNRVSISTVALFTLAMAAATGLGALPFFFVE LDPQWAGLCNGMAAGVMLAASFDLVQEGQAHGGGSWVMIGILSGGLFILLCKKFLEQYGEVSMLDIKGADATKVVLVIGIMTLHSFGEGSGVGVSFAGSK GFSQGLLVTLAIAVHNIPEGLAVSMVLASRGVSPQNAMLWSVITSLPQPLVAVPSFMCADAFNKFLPFCTGFAAGCMIWMVVAEVLPDAFKEASPSHVAS AATVSVALMEAFSTLFQSFSHDYNSEDASGFFVSLLFGLGPLLGGIILVAFALAFRLQHALLMGSASGIAFVLATWRPLQLLASSKMGFIPLTFLLATGA AFVHSLGSITLGLGGRKKASANNLPAVSGFPVSVHTLQSFLSCGAIGLHALAEGLALGVAAPKAYGLGRHMVLPVSLHGLPRGAAVASCILGATDSWHSA LAAAALIGFVGPMSAIGSILAGIDYSGLDHVMVFACGGLLPSFWRIVKRAIRLDTKKTGVGVAAGVGFAILCLTCTKLVCLHTPYCNSAPEAVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08650			ZIP metal ion transporter fami...		Lus10003243 [exp]	0	1
AT5G08570			Pyruvate kinase family protein...		Lus10013449 [exp]	3.0	0.9492
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	5.7	0.9181
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10017165 [exp]	6.3	0.9180
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	10.0	0.8620
AT4G10265			Wound-responsive family protei...		Lus10018532 [exp]	10.2	0.9175
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	10.5	0.9038
AT4G24110			unknown protein		Lus10001676 [exp]	10.6	0.9229
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10024356 [exp]	11.0	0.9001
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	13.4	0.8986
AT5G08570			Pyruvate kinase family protein...		Lus10013450 [exp]	15.2	0.9081

Compare expression of checked genes

Lus10003243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.