Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01950 931 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 856 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 549 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 384 / 6e-118 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 372 / 6e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 372 / 8e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 358 / 6e-109 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 275 / 6e-79 Leucine-rich repeat protein kinase family protein (.1) AT5G59680 232 / 8e-64 Leucine-rich repeat protein kinase family protein (.1) AT5G59650 231 / 3e-63 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035605 [exp] 1594 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 863 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 857 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 659 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 611 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 390 / 9e-120 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 309 / 7e-91 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 281 / 4e-85 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 264 / 3e-79 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111100 [exp] 1071 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 1045 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 999 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 875 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159200 [exp] 872 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 862 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140101 [exp] 830 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 405 / 5e-126 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 388 / 9e-120 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 382 / 2e-117 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003244 pacid=23182536 polypeptide=Lus10003244 locus=Lus10003244.g ID=Lus10003244.BGIv1.0 annot-version=v1.0 ATGTTGAGAAACACAGCCAGGACATGTGTTTTCGTGGCTACTTGGTGTTGCCTGCTCCTTGTCGCAATTGGAGATGTCACTCATCCCTCTGAAGTGAGTG CTTTACTCGCCGTGAAGAAGAAGTTGATTGATCCCATGGGACACCTGGAGGATTGGAATAAGGGGGATCCTTGTAAATCCAACTGGACTGGTGTATCTTG CTTTTACACCAACGAAACTGATGGATATCTTCATGTTAGAGAGCTTCAGCTTCTGAACATGAATCTCTCCGGTTCTTTGGCGCCTGAGCTTGGTCTGCTC TCTGGTCTCCAGATTCTGGATTTCATGTGGAATCAGTTGACTGGTAATATACCCAAAGAGATTGGAAAGCTGTCATCTTTGAAACTCCTGCTCTTGAATG GGAACAAGCTCTCAGGTTCTCTGCCTGCTGAGCTTGGATCTTTGTCCAGGCTAAACAGACTCCAAGTTGATGAGAATGAGATCTCAGGTCCTATACCAAA ATCATTTGCTAACATGAGCAGTGTCAGACACCTCCACATGAACAACAACTCATTCAGTGGTAAAATCCCAGCTGAGCTTTCCCAGTTACCATCACTCTTA CACATGCTGTTGGATAACAACAACTTATCAGGATATCTTCCACCAGAACTATCGAAATTGTCAGCCTTGCGTATACTGGATCTGAGCTGGAATAGCCTTT CTGGACCTTTACCAGCAAAACTTTCTGATAACATGAGAGCTATTCATCTTTCCAATAACAACCTTAATGGAACAATACCTGGGAGTTACTCGAATCTTAA TTCGCTTCAGACATTGTCAGTTGAAAATAATAGGTTGACTGGTTCCATTCCAATAACAATCTGGCAGAACATCTCCTGGGATTCAACTACTAGACTAGAG CTTGATCTCAGGAAGAATCTTCTCTCAAGCATTCAAGGAGAACTAAATCCACCAAGTAATGTAACCTTAAGGCTCCAAGGTAATCCCATCTGCGAGAACG CTAATATAGCAAACATTGGAAAGTTTTGTGGATCTATGGAGATGGAAGGTTGGACCAGTACTGAAAAGTCAACGAATTCTGCTGTTAGCTGTCCAGTCCA AGCATGCCCTACAGATGATTTCTTTGAATATGTGCCCGAATCACCTTTGCCATGTTTTTGTGCATCTCCACTTAGAATCGGCTACAGACTTAAGAGCCCG AGTTTCTCATTTTTCCCTCCGTTACTTGTCGAATTCGAGACATATATAACGTCTACACTGGGGTTGGAACTCTACGAGCTATTCATTGATGCATATGCCT GGGAACAAGGTCCTCGTTTAAGAATGGATCTGAAGCTTTTTCCTGCATGGGATAATGCTACCCACTCGAATACGTTTAATTTATCAGAAGTTCAACGAAT AAGAGGTCGATTCACATCATGGCGTTTCCCCGGAAGTGATCTGTTTGGACCGTATGAGCTGCTTAATTTCACTCTGGTTGGACCTTATTCACGGATGAAC TTGGAAGACCAAAGGAGCAATATGAGCAAGGGAGTTGTAGCAGCCATAATATTAGGTGCTATTGCCTGTGTGGTTGGACTTTTTGCAATAGCAGGGCTAC TAGTTGCAAGAAGAAATGCTAGAGTCCGTCACAAGCTGTCGAGAAGACGTTTATCGTCGAAGGCGTCCATGTCCATAGAAGGGGTTAGAGAGTTTAGTTT CAAAGAAATGATCGGGGCTACTGATAATTTTAGCAGCTCAAGTGAAGTTGGTCGAGGTGGGTATGGGAAGGTCTACAGAGGCGTTTTAGCAGACCAAACA TTGGTGGCCATAAAACGTGCTGAAGAAGGATCATTACAAGGACAGAAGGAATTTCTGACAGAGATCAAGTTATTGTCAAGGCTGCACCATAGGAATCTGG TATCTTTGATCGGGTACTGTGACGAGGAAGGGGAGCAGATGCTGGTGTATGAGTTCATGCCCAATGGCACACTGCGTGACTGGCTTTCTGGTAAAAGCAA GGAGAAAATACTGAACTTTGGAAGGAGGGTAAGCATAGCACTCGGTTCAGCGAAGGGGATACTGTACCTACACAGGGAAGCAAATCCTCCAGTATTCCAC AGGGACATAAAGGCAACCAACATACTTCTGGACTCGAAGCTGATAGCTAAAGTAGCAGACTTTGGCCTGTCAAGGCTGGCTCCTGTAATGGGTGAAGATG AGGAAGCTGCAGGGAACCCAGCCAATTTTGTTTCCACTGTAGTCAGGGGCACCCCGGGATACCTGGACCCGGAGTACATGCTGACCCACCAGCTAACAGA CAAGAGCGACGTGTACAGCTTGGGGATCGTGTTACTCGAGCTGCTGACAGGGATGCAGCCTATATCACACGGGAAGAACATAGTGAGGGAAGTGAAGATA GCTTACAGCGGAGGAATGATGTTCTCAATAATAGACAGCAGGATGGGATCATACCCTTCGGAGTGCGTGGAGAAGCTGGTCAGTCTCGCGCTGAGGTGCT GTCAGGAGAAGCCGGAGAAGAGACCTCCGGTTTCCGAAGTGGTTAGGGAGCTGGAGGTTATAGTGAAGATGATGCCTCCTGATGATCATGCTGCAGCTGC ACTTGTAGCTATGTATGATGATACTGATGAGGTGGCAGGAGGAGGATTGTCAAGTAGTAAAGCTGAGGAGGGTTCGTCAACATCAACATCAACGGCAGGA TTTGCGCCGTCATCGTTTTACACCAGCAGTACTAGTGATGGAAGAAGCAGGAGTTTAAAGAGTGTAGTGTCTGGGAGTGATTTGATGAGTGGAGTTGCTC CTACTATTTCGCCTCGCTAG
AA sequence Show only first row Show all	>Lus10003244 pacid=23182536 polypeptide=Lus10003244 locus=Lus10003244.g ID=Lus10003244.BGIv1.0 annot-version=v1.0 MLRNTARTCVFVATWCCLLLVAIGDVTHPSEVSALLAVKKKLIDPMGHLEDWNKGDPCKSNWTGVSCFYTNETDGYLHVRELQLLNMNLSGSLAPELGLL SGLQILDFMWNQLTGNIPKEIGKLSSLKLLLLNGNKLSGSLPAELGSLSRLNRLQVDENEISGPIPKSFANMSSVRHLHMNNNSFSGKIPAELSQLPSLL HMLLDNNNLSGYLPPELSKLSALRILDLSWNSLSGPLPAKLSDNMRAIHLSNNNLNGTIPGSYSNLNSLQTLSVENNRLTGSIPITIWQNISWDSTTRLE LDLRKNLLSSIQGELNPPSNVTLRLQGNPICENANIANIGKFCGSMEMEGWTSTEKSTNSAVSCPVQACPTDDFFEYVPESPLPCFCASPLRIGYRLKSP SFSFFPPLLVEFETYITSTLGLELYELFIDAYAWEQGPRLRMDLKLFPAWDNATHSNTFNLSEVQRIRGRFTSWRFPGSDLFGPYELLNFTLVGPYSRMN LEDQRSNMSKGVVAAIILGAIACVVGLFAIAGLLVARRNARVRHKLSRRRLSSKASMSIEGVREFSFKEMIGATDNFSSSSEVGRGGYGKVYRGVLADQT LVAIKRAEEGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSGKSKEKILNFGRRVSIALGSAKGILYLHREANPPVFH RDIKATNILLDSKLIAKVADFGLSRLAPVMGEDEEAAGNPANFVSTVVRGTPGYLDPEYMLTHQLTDKSDVYSLGIVLLELLTGMQPISHGKNIVREVKI AYSGGMMFSIIDSRMGSYPSECVEKLVSLALRCCQEKPEKRPPVSEVVRELEVIVKMMPPDDHAAAALVAMYDDTDEVAGGGLSSSKAEEGSSTSTSTAG FAPSSFYTSSTSDGRSRSLKSVVSGSDLMSGVAPTISPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	0	1
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	1.0	0.9697
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10018857 [exp]	1.4	0.9586
AT5G36930			Disease resistance protein (TI...		Lus10038532 [exp]	5.2	0.9310
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	6.2	0.9552
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	8.1	0.9453
AT1G69550			disease resistance protein (TI...		Lus10001038 [exp]	9.5	0.9354
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	10.2	0.9384
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	10.4	0.9448
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	13.6	0.9439
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	14.7	0.9413

Compare expression of checked genes

Lus10003244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.