Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11150 297 / 2e-99 TUFF, EMB2448, VHA-E1, TUF embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) AT3G08560 296 / 9e-99 VHA-E2 vacuolar H+-ATPase subunit E isoform 2, vacuolar H+-ATPase subunit E isoform 2 (.1) AT1G32070 296 / 1e-98 ATNSI nuclear shuttle interacting (.1.2.3) AT1G64200 273 / 8e-90 VHA-E3 vacuolar H+-ATPase subunit E isoform 3, vacuolar H+-ATPase subunit E isoform 3 (.1) AT1G26220 110 / 4e-28 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT4G19985 59 / 2e-09 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035604 [exp] 788 / 0 AT1G32070 322 / 8e-109 nuclear shuttle interacting (.1.2.3) Lus10033934 [exp] 281 / 6e-93 AT4G11150 362 / 3e-128 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Lus10032349 [exp] 280 / 9e-93 AT4G11150 363 / 5e-129 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Lus10017548 [exp] 244 / 5e-71 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10029099 [exp] 114 / 2e-29 AT1G26220 239 / 6e-81 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10013061 [exp] 110 / 5e-28 AT1G26220 244 / 6e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10028990 [exp] 58 / 4e-09 AT4G19985 204 / 1e-65 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G140000 [exp] 333 / 3e-113 AT1G32070 287 / 3e-98 nuclear shuttle interacting (.1.2.3) Potri.016G139800 [exp] 291 / 3e-97 AT1G64200 325 / 1e-113 vacuolar H+-ATPase subunit E isoform 3, vacuolar H+-ATPase subunit E isoform 3 (.1) Potri.013G051500 [exp] 280 / 8e-93 AT4G11150 351 / 5e-124 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Potri.019G029200 [exp] 277 / 1e-91 AT4G11150 351 / 5e-124 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Potri.008G113600 [exp] 118 / 5e-31 AT1G26220 252 / 3e-86 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.019G065400 [exp] 66 / 6e-12 AT4G19985 213 / 3e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF01991 [flax] [poplar] vATP-synt_E ATP synthase (E/31 kDa) subunit CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10003245 pacid=23182528 polypeptide=Lus10003245 locus=Lus10003245.g ID=Lus10003245.BGIv1.0 annot-version=v1.0 ATGAATGAGGGAGATGTATCGAAGCAGATTCAGCAGATGGTAAGGTTCATACGGCAGGAGGCGGAGGAGAAAGCCAACGAGATCTCGGTGTCGGCGGAGG AGGAGTTCAACATTGAGAAACTGCAGTTGCTGGAAGGGGAGAAGAAGAAGATGAGGCAGGAGTTTGAGCGCAAAACCAAGCAGGTTGAAGTTCGCAACAA GATCGAGTACTCGACGCAGCTGAATGCATCCAGGATTAAGGTCCTGCAAGCACAAGACGACATTGTGACTGCGATGAAAGAAGCGGCGGCGAAGAAGCTT TCGAAGATGTCATCGGACAAAGGCGCATACAAAGCCCTCTTAAAGAGCTTGATTGTGGAGGGGTTGCTGCGGCTGAAGGAGAGATCGGTGCTGCTGCGGT GCAGAGAGGCGGACAGAGGAGTAGTGGAGTCTGTGCTTGAAGAAGCCAAGAAGGAGTTTGCTGATAAGCTCAAGGTGTCCGCACCGCTGATCACACTCGA CAAGCAAGTCTACCTCCCGGCTGGACCTGGTTCGCAGAATCAACATGGCGTCATTCATTGCTCGGGAGGAGTTGTGTTGGCATCTCAAGACGGGAAGATC GTGTGTGAGAACACAATTGATGCCCGATTAGACATTGCTTTCAGACAGAAACTTCCCCAGGCCTCGTGTTATGTTCAAGTTCATGTTCATGTTCATGTTT TCACTTTCAACCATTTGAGTTTTGGCCTTGCAGCTAGCAGAAGGCTTAAGGTCTCTCGGATTAAGGCCAACTTCTGGGAATCCATGAGATCTGGTTTCTT GAAGGAAAACTCTGCTCAAGTTGTTGAACCACCCTCAACCCCTGACCAAGAAGAAGAAGACGAAGAAGAACCATTGCCTGAAGAGATCCTACTCCTCGAA AGGAGTGAACCTGATGGAGTAATCGAACAGATCATTTTCTCTTCCGGGGGTGACATTGATGTTTATGATCTTGAAGGCTTATGTGACAAAGTAGGCTGGC CGAGGAGGCCATTGTCGAAGTTAGCTGCAGCCTTAGAAAACAGTTACATGGTAGTCACCTTGCATTCTGTAAGAAAGTTACCTGGATCAGAAGGGAATGA GCAGAAAAGACTGATTGGCATGGCTCGCGCCACATCTGATCATGTCTTCAATGCTACCATATGGGACGTTATCGTGGATCCTAGTTATCAGGGGCAAGGC CTTGGAAAGGCTCTGATTGAAAAGCTGGTTAGAGCTCTCCTTCAAAGGGACATTGGCAACATAACTCTATTTGCAGATAGTCAAGTTGTGGAATTCTATC GGAATTTAGGCTTTGAAGCTGACCCAGAGGGCATTAAGGGGATGTTTTGGTACCCAAAGTACCAATAG
AA sequence Show only first row Show all	>Lus10003245 pacid=23182528 polypeptide=Lus10003245 locus=Lus10003245.g ID=Lus10003245.BGIv1.0 annot-version=v1.0 MNEGDVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLLEGEKKKMRQEFERKTKQVEVRNKIEYSTQLNASRIKVLQAQDDIVTAMKEAAAKKL SKMSSDKGAYKALLKSLIVEGLLRLKERSVLLRCREADRGVVESVLEEAKKEFADKLKVSAPLITLDKQVYLPAGPGSQNQHGVIHCSGGVVLASQDGKI VCENTIDARLDIAFRQKLPQASCYVQVHVHVHVFTFNHLSFGLAASRRLKVSRIKANFWESMRSGFLKENSAQVVEPPSTPDQEEEDEEEPLPEEILLLE RSEPDGVIEQIIFSSGGDIDVYDLEGLCDKVGWPRRPLSKLAAALENSYMVVTLHSVRKLPGSEGNEQKRLIGMARATSDHVFNATIWDVIVDPSYQGQG LGKALIEKLVRALLQRDIGNITLFADSQVVEFYRNLGFEADPEGIKGMFWYPKYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	0	1
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	1.4	0.9373
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	2.4	0.9272
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	2.4	0.9239
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	3.5	0.9015
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	3.7	0.8894
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	5.1	0.8663
AT3G28760			unknown protein		Lus10005250 [exp]	6.0	0.8851
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	6.0	0.8704
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	6.0	0.8948
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	6.3	0.8859

Compare expression of checked genes

Lus10003245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.