Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36320 179 / 2e-58 A20/AN1-like zinc finger family protein (.1) AT3G52800 149 / 1e-46 A20/AN1-like zinc finger family protein (.1) AT1G12440 126 / 2e-37 A20/AN1-like zinc finger family protein (.1.2) AT2G27580 124 / 1e-36 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 124 / 2e-36 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT4G22820 123 / 4e-36 A20/AN1-like zinc finger family protein (.1.2) AT1G51200 107 / 6e-30 A20/AN1-like zinc finger family protein (.1.2.3.4) AT3G12630 90 / 3e-23 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT4G25380 82 / 2e-20 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT4G14225 76 / 4e-18 A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035603 [exp] 190 / 5e-63 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1) Lus10007015 [exp] 138 / 6e-42 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10006671 [exp] 131 / 2e-39 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10008912 [exp] 126 / 3e-37 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10028903 [exp] 125 / 1e-36 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10031833 [exp] 124 / 2e-36 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10020594 [exp] 122 / 7e-36 AT2G36320 149 / 2e-46 A20/AN1-like zinc finger family protein (.1) Lus10031262 [exp] 117 / 8e-34 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10030150 [exp] 101 / 9e-28 AT4G12040 119 / 8e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G056500 [exp] 136 / 3e-41 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.009G144100 [exp] 133 / 2e-40 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.016G051700 [exp] 132 / 1e-39 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.004G184300 [exp] 129 / 1e-38 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.001G018600 [exp] 126 / 3e-37 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G115000 [exp] 123 / 3e-36 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.003G205500 [exp] 122 / 6e-36 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.007G078500 [exp] 119 / 7e-35 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.003G117100 [exp] 111 / 2e-31 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.015G131900 [exp] 107 / 3e-30 AT4G22820 123 / 2e-36 A20/AN1-like zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01754 [flax] [poplar] zf-A20 A20-like zinc finger PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10003246 pacid=23182523 polypeptide=Lus10003246 locus=Lus10003246.g ID=Lus10003246.BGIv1.0 annot-version=v1.0 ATGGCCGAGGAACACAGATGCGAAGCACAGGAAGGCCACCGTCTCTGCGTAAACAACTGCGGCTTCTTCGGGAGCCCCACGACGATGGATCTCTGTTCAA AGTGCTACGGAGATTATTGCATCAAGGAGCAACAGCAAGCCTCAATCAAAGCCTCTCTTTCTCCGCCTTCCCCGTCATCTTCATTGGCCGTCAATATTCC TCAGCCGCTTCCCCCTTCCTTCGACTTACCGTCAGAGGTCCGGCCACCGGTCGTCGTGGATGGCCCCGCGGTAGCCCCGCCGCCGCAGCAGCAGCCAAAT CGATGCTCCACGTGTAGGAAGCGGGTCGGACTGACCGGGTTCAAGTGCAGGTGCGGGATCACCTTTTGTGGGGTCCACAGGTACCCGGAGAAACACAGCT GCGACTTTGATTTCAAAAAGGTAGGGAGGGAGGAGATCGCGAGGGCCAATCCTCTAGTCATCGCTCAGAAGCTGGACAAGATATGA
AA sequence Show only first row Show all	>Lus10003246 pacid=23182523 polypeptide=Lus10003246 locus=Lus10003246.g ID=Lus10003246.BGIv1.0 annot-version=v1.0 MAEEHRCEAQEGHRLCVNNCGFFGSPTTMDLCSKCYGDYCIKEQQQASIKASLSPPSPSSSLAVNIPQPLPPSFDLPSEVRPPVVVDGPAVAPPPQQQPN RCSTCRKRVGLTGFKCRCGITFCGVHRYPEKHSCDFDFKKVGREEIARANPLVIAQKLDKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	0	1
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	2.4	0.9522
AT5G49710			unknown protein		Lus10015965 [exp]	6.2	0.9493
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	6.7	0.9451
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	7.1	0.9393
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10042608 [exp]	7.3	0.9319
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	8.4	0.9358
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	9.2	0.9125
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10005718 [exp]	11.4	0.9287
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10031438 [exp]	13.0	0.9271
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	15.2	0.9437

Compare expression of checked genes

Lus10003246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.