Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59310 190 / 6e-58 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59340 176 / 2e-52 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59320 161 / 9e-47 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 99 / 4e-24 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004060 [exp] 240 / 2e-77 AT3G59310 305 / 5e-103 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10026744 [exp] 206 / 7e-64 AT3G59310 451 / 4e-160 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10025530 [exp] 150 / 4e-42 AT3G59310 432 / 7e-152 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10002279 [exp] 89 / 5e-20 AT3G59330 111 / 2e-28 Eukaryotic protein of unknown function (DUF914) (.1) Lus10022798 [exp] 47 / 7e-06 AT3G07080 342 / 5e-116 EamA-like transporter family (.1) Lus10011864 [exp] 47 / 1e-05 AT3G07080 453 / 1e-158 EamA-like transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030800 [exp] 257 / 7e-84 AT3G59310 265 / 7e-87 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.002G230600 [exp] 194 / 5e-59 AT3G59310 436 / 8e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.014G151800 [exp] 187 / 3e-56 AT3G59310 417 / 3e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.014G189500 [exp] 44 / 8e-05 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF06027 [flax] [poplar] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Lus10003247 pacid=23182541 polypeptide=Lus10003247 locus=Lus10003247.g ID=Lus10003247.BGIv1.0 annot-version=v1.0 ATGAATCTGCTTAAGGGGGGAAGCAGTTTGCGGTGGAGAATTGTGTATCTGGTAGTGCTGGGTCAAGTGGTTTCCCTTCTCCTAGCTCTCACTACCTTCT CCGCTTCCCTGATTGCGGCCCTAGGTGTTGATGTGCCCATTACTCAAGGAGCTATCCCTTACTTGGCCGGAGCTCTCCTCTATGGCGGCATCCTTATTCA CCGACGCCACAAACTACTGGTTTCTTGGTACTGGTATTTGCTGCTGAGCTTCCTTGATGTTCATGCAATCTTTCTCTTTAACAAGGCATACCAATTCACG TCAATCACGAGCGTCACGATGCTAGATTGTGTGACGCTCTTGTGGGTCATAATCTTGACCCGTGTTTTCTTCGGAACACGCTACTCCACCAGCCAGTTCG CTGGAGCCGCCGTTTGTGTCTCAGGGCTCGCCTTGGTCATCCTCTCCGACGTCGGAGTTGGTGGTGGTGATGATGAAGGTGGATCCAGACCGATCTTGGG GGATGTACTTGTGATTGCTGGAACAGTCTTTGATGCCTTAAGCAATGTTGGCGAGGAATTTTGTGCGAAGAAGAAAGATCGGACCGAGCTAATGGCAATG ATAGGGGTGTTTGGGTTCCTGATCAGCATTATAGAGATCTCCATGGTGGAGCTTGACAATGTACAATCAATCCAGTGGTCCACAAATCTGGTTATAGCCT TTGTTGGCTATGGCGTGTGCTCATTTCTGCTCTTCTCAATCTTTTCTTGGTTCATACAGGTGACAGGGGCAACAATGTACAATTTGTCGATTTTGACGTC TGATATGTGGGTAGTCTTGATCAGACTGTTCTTCTACCATCAACAGGTAACGTGGTTGTACTATGTTGCTTTCGGAATGGTTGCCATTGGCCTCATTCTC TACTCCATTGGCGAGGAGGATACAACCGGAGACACCGTTCCAGACATTGCAGATGGAGGTGAAAACTCCTATTGCCGATTACCAAATGCTCCGTGA
AA sequence Show only first row Show all	>Lus10003247 pacid=23182541 polypeptide=Lus10003247 locus=Lus10003247.g ID=Lus10003247.BGIv1.0 annot-version=v1.0 MNLLKGGSSLRWRIVYLVVLGQVVSLLLALTTFSASLIAALGVDVPITQGAIPYLAGALLYGGILIHRRHKLLVSWYWYLLLSFLDVHAIFLFNKAYQFT SITSVTMLDCVTLLWVIILTRVFFGTRYSTSQFAGAAVCVSGLALVILSDVGVGGGDDEGGSRPILGDVLVIAGTVFDALSNVGEEFCAKKKDRTELMAM IGVFGFLISIIEISMVELDNVQSIQWSTNLVIAFVGYGVCSFLLFSIFSWFIQVTGATMYNLSILTSDMWVVLIRLFFYHQQVTWLYYVAFGMVAIGLIL YSIGEEDTTGDTVPDIADGGENSYCRLPNAP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59310			Eukaryotic protein of unknown ...		Lus10003247 [exp]	0	1
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	1.0	0.9616
AT5G18150			Methyltransferase-related prot...		Lus10005698 [exp]	4.7	0.9473
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	10.8	0.9331
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	14.5	0.9165
					Lus10038520 [exp]	15.0	0.9283
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	15.9	0.9118
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	16.7	0.9226
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	21.0	0.9324
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	21.7	0.9038
AT1G78860			D-mannose binding lectin prote...		Lus10022495 [exp]	21.9	0.9065

Compare expression of checked genes

Lus10003247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.