Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57170 213 / 5e-66 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033869 [exp] 322 / 3e-106 AT3G57170 464 / 4e-156 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044500 [exp] 244 / 4e-76 AT3G57170 470 / 1e-158 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05024 [flax] [poplar] Gpi1 N-acetylglucosaminyl transferase component (Gpi1)
Representative CDS sequence Show only first row Show all	>Lus10003248 pacid=23182530 polypeptide=Lus10003248 locus=Lus10003248.g ID=Lus10003248.BGIv1.0 annot-version=v1.0 ATGTTCTCTTTGAATGCAATACAAATATGGTCTACGCTGTGGGTCTTCATCGATTTCCTCGTCATTTATTTCATCAAGGGACTCGCTGTACTGGGAACAC TTTCTGGAGTAACTATACCTGCTGCTTTGGCAATTGATATTGTTGGGTTGGGGACTGCACACGTTTCTGCCCTTCACTGGGGCATCTCACTCTTATATTA CAATCAGATACAAGCACTAGGTGCAATATGGCGTCTTTTCAGGGGGAGAAAAAAGAATCCTCTACGCCGAAGGCTAGATAGCTATGACTACACAGTGAAG CAACATGTTGTTGGTTCTCTTCTGTTCACTCCGCTTCTTCTGTTACTACCGACTACTTCTGTTTTCTATATTTTCTTCACTATATTGAACACAGCCATTA CCATAGTTTGTACCATGATCGAGGTCATCATATTGATGATCCATGGTACACCTTATTTTGAAATTTTCCTTTGGCTGTACCGGCGTAGCAGATTCCCTTC TGGTATATGGTTTGAGATTTTATCTGGGGTTTCTGGTTTTCTCATTATGTCAGCACAGGGAGCTCTTACTGGAATAAGAACTGCATCGAGATTGGATTCC AAGCTCCCATCAAAATTGCCGTGGGTGTCAATACCTGCCAGTGAGTACTGGGCTCTCTGCTACAGTTCAGTAATGGAATGCATGCCAGAACATTTGAGGA TGCAACGATAA
AA sequence Show only first row Show all	>Lus10003248 pacid=23182530 polypeptide=Lus10003248 locus=Lus10003248.g ID=Lus10003248.BGIv1.0 annot-version=v1.0 MFSLNAIQIWSTLWVFIDFLVIYFIKGLAVLGTLSGVTIPAALAIDIVGLGTAHVSALHWGISLLYYNQIQALGAIWRLFRGRKKNPLRRRLDSYDYTVK QHVVGSLLFTPLLLLLPTTSVFYIFFTILNTAITIVCTMIEVIILMIHGTPYFEIFLWLYRRSRFPSGIWFEILSGVSGFLIMSAQGALTGIRTASRLDS KLPSKLPWVSIPASEYWALCYSSVMECMPEHLRMQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	0	1
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	1.0	0.9494
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	1.4	0.9055
					Lus10034884 [exp]	2.0	0.8512
					Lus10007992 [exp]	2.4	0.8988
AT3G05327			Cyclin family protein (.1)		Lus10004475 [exp]	2.6	0.8364
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	3.5	0.8367
AT5G10010			unknown protein		Lus10006744 [exp]	4.0	0.8302
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10025060 [exp]	4.5	0.8379
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	5.5	0.8262
					Lus10026470 [exp]	6.8	0.7420

Compare expression of checked genes

Lus10003248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.