Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57170 52 / 2e-07 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033869 [exp] 256 / 2e-79 AT3G57170 464 / 4e-156 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1) Lus10014756 [exp] 96 / 1e-21 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10035602 [exp] 84 / 9e-20 ND / Lus10035601 [exp] 0 / 1 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044500 [exp] 113 / 1e-27 AT3G57170 470 / 1e-158 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003249 pacid=23182538 polypeptide=Lus10003249 locus=Lus10003249.g ID=Lus10003249.BGIv1.0 annot-version=v1.0 ATGTGGCTAAAAACTAAAATCAGAGGGACGAATTTGTACTTTCACACCAATTTATCCGTGGGCCTTTTTTGTCAACCCAAGCCCATCAATGGTGACGCAG CTTCTTTCCAACAGACTCTCATCTCAAGTCTCAAGGCCTCCAGCTGCCAGCTGCACTACAGGCCGGAAATAAGGCAGCTACTGCTTCCCATTCAGGAAAT CACCCATGATATAAATGGAAGGATGCCTGTGTTCCTACAGGAGCAATCGTGTCTACTGGGTCAATGCTCCACACCCCTGAACAGTAATGGTGAAAGCCTT AATGTCAGTGTAGAACAAGAGAATGAAGTACGGCCCTCTCCTCACGACATTTTGTTGGTGAAAAAGAAGCGACATTCATTTCGGGAACACAGTGAAGAAA GTGTTTGTGGATGTAATCAGCTCGATGGGTTTGTTCAACAATGTGGGAAGAATGATGGGGAAGGAGACTATTGGATCCATATGATACACAAGTCTAGTGA TATATCTGGTGGAGGAAGGGTTCCTCAGTTGCATCATGTTCACTGGAAAGGAAAAGAAGTAGTTCAATGCAATGTTCACGTGATACTGTATGATATTCCT GTCTATGGCGAACAACACTTTACAATGAAACATTGCATTAGGTTACCGATGAAATCATTTTTTGCTTCTGTGGAGTGCAATTTGCTTGGTCCTTGTTATT CTGACTCTTGTTCTGTTTCTGTTTCATCCTTAAGGTTAAGAGCATGTGTGGAGTATGCAGAAAAAGCTGCCTTGCATAGGCATTCTATGTGGACTAGTTT ACTTGTCGATCTTCTTTTCGGAAACTTGATTGGCCTAGTACTCTTTTCTCAGGCAGAATCTGTATGGTTGTGGCTCTTGTTCTTTGCCAAAGCCTCGACA AATGAGATATTGCGATCTGGTTGTGTGTGGTTATGGGAGTACCAGCTGGCTTTAAGTTAA
AA sequence Show only first row Show all	>Lus10003249 pacid=23182538 polypeptide=Lus10003249 locus=Lus10003249.g ID=Lus10003249.BGIv1.0 annot-version=v1.0 MWLKTKIRGTNLYFHTNLSVGLFCQPKPINGDAASFQQTLISSLKASSCQLHYRPEIRQLLLPIQEITHDINGRMPVFLQEQSCLLGQCSTPLNSNGESL NVSVEQENEVRPSPHDILLVKKKRHSFREHSEESVCGCNQLDGFVQQCGKNDGEGDYWIHMIHKSSDISGGGRVPQLHHVHWKGKEVVQCNVHVILYDIP VYGEQHFTMKHCIRLPMKSFFASVECNLLGPCYSDSCSVSVSSLRLRACVEYAEKAALHRHSMWTSLLVDLLFGNLIGLVLFSQAESVWLWLLFFAKAST NEILRSGCVWLWEYQLALS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003249 [exp]	0	1
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10015847 [exp]	4.9	0.8687
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	5.7	0.8716
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10026005 [exp]	9.8	0.8002
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	11.6	0.8809
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	15.4	0.8744
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	29.5	0.8538
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	31.3	0.8646
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	31.5	0.8602
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10014697 [exp]	31.6	0.8409
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	34.9	0.8605

Compare expression of checked genes

Lus10003249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.