Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10070 298 / 4e-94 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) AT1G17440 130 / 1e-31 CKH1, TAF12b, EER4 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035601 [exp] 598 / 0 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10006528 [exp] 140 / 2e-35 AT1G17440 280 / 4e-86 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083500 [exp] 340 / 5e-111 AT3G10070 298 / 3e-95 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) Potri.001G169900 [exp] 138 / 1e-34 AT1G17440 267 / 2e-80 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Potri.003G064100 [exp] 135 / 1e-33 AT1G17440 266 / 1e-79 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF03847 [flax] [poplar] TFIID_20kDa Transcription initiation factor TFIID subunit A
Representative CDS sequence Show only first row Show all	>Lus10003250 pacid=23182543 polypeptide=Lus10003250 locus=Lus10003250.g ID=Lus10003250.BGIv1.0 annot-version=v1.0 ATGGAGCAGCTAAACCCCGCCACTCCTTCAACCGTACCGCCTCCTGCGACAACCGCCACCGTTTCTCAACCCACTGACCCCTCGCCGGTCCGACCTCAGC CCCAGCAGTCACAAATAGCGGCCAATATTCAACAACAACATCTGCCGCAGCAGCAGCAACCAGCCGCACAACCACCATCTATCTCAGCTCCGGCTCCCGC TCCCGCTGCCACTCCCACTCCGAACCCTAACCCTAATCTGAACCCCAACCCACTCCCGAGACCGTCAAATCCGCTGGTTCAGTCTCAATCTCAGTCCAAT ACTGTCACATCCACAGCTCCTAGGCCCCACAGCCACAGGCCATTGCAACATCCTCACCCCCACACTCACTTCCAGCATTTTTCTTCTCCTTCGCCTCCTA CCCCGGTTCCTTCTCTGTCTTCAGCCCCCTCGGCTCCGCTTTCTACCCAGCAACAGAGAGGCGTCGTCGCAATTGGGATCCCAGCCGCCCATCCTAGCAC TTTTACTCAACCTTTTGGGGGATTGAATCGTGGTCCTGTCAATGTGCCTGAATCAGCTGCTAATTCCAGTGCTCCTCAGGTAAGACACGGAATGCAGGGA ATTCAGGGGGTTGGGGTGATGAGTTCAATTGGCTCGAGCCCTCAAATGAGGCCCGGTGGACTTCCTGCTCATCAACAACAGAGACCATTTCAGTCTTCTA TTAGGCCACCTGCTTCAAGTACCCAGACCCCAAATACCCAGAATTTCCAAGGTCATAGCTTCATGAGGCCATCAGGTGGTCTTACCGGCTCTTCAACACC AAACACTTCACAGGGTATGCAGCCTTCCAATCAGCCATGGCTGTCTTCTGGAGCTCAGGGAAAGCCTCCAATTCCTCCCCCTTCATATAGAGCACAAATA AGCACCCAATCCTTGCAACAAAGACCACATGTTCTTCACCATCAATCTGCGCTGCCAAATACTCCTCAGCAACACACACCCACTGCACAAGCCCCACAAT CTTTAACAACCCAAGCTGCTGGGGAGCAGCATGGACAGCAAGTTCCTTCATCAAGGGTGACACAACCTGTTCCCCATCCACAACAGACTCCAAGGGTTCC AGCTTCAATCAACCAGAAGCAGCCTTTACAGGGAATCCAGCAGCCAGCTGCGCTGCATACCGTAAGTAAGGCTGCTAATGTAGACAATGATGAGACCAGC TCTCGGATTCTAAGCAAAAGAAGTATCCAAGACCTAGTTGGCCAGGCAAGCCTAGATCTATTCTTATATGATGGTGCCTTCCCCTATATAGCTAGTTTTT GTTCGATTGATCCTTCGGAGAGGTTGGATCCTGATGTTGAAGATATTCTTGCTGATATAGCTGACGAATTTGTTGAGTCCATTACAACTTTTGGTTGCTC TTTAGCCAAACATCGCAAGTCTGATACATTGGAAGCAAAGGATATTCTTCTACATCTGGAAAAGAATTGGAACATAACACTTCCTGGTTTTAGTGGTGAT GAGATCAAGACGTATAGAAAACCGCCAACAAATGATGTCCACAAGGAGAGGCTCGCAGCGATAAGGAAGTCAGTATTGGTATCAGAGACGGGTACTGGTA GGAGTGTTGGACAAGCTCCTGGAAGTGGGAAGAGCAACCTGACAAAGACTCCTGTGAATCCGATGGTTTCTCCTCCTAACCTGACAAAGACAAACTGA
AA sequence Show only first row Show all	>Lus10003250 pacid=23182543 polypeptide=Lus10003250 locus=Lus10003250.g ID=Lus10003250.BGIv1.0 annot-version=v1.0 MEQLNPATPSTVPPPATTATVSQPTDPSPVRPQPQQSQIAANIQQQHLPQQQQPAAQPPSISAPAPAPAATPTPNPNPNLNPNPLPRPSNPLVQSQSQSN TVTSTAPRPHSHRPLQHPHPHTHFQHFSSPSPPTPVPSLSSAPSAPLSTQQQRGVVAIGIPAAHPSTFTQPFGGLNRGPVNVPESAANSSAPQVRHGMQG IQGVGVMSSIGSSPQMRPGGLPAHQQQRPFQSSIRPPASSTQTPNTQNFQGHSFMRPSGGLTGSSTPNTSQGMQPSNQPWLSSGAQGKPPIPPPSYRAQI STQSLQQRPHVLHHQSALPNTPQQHTPTAQAPQSLTTQAAGEQHGQQVPSSRVTQPVPHPQQTPRVPASINQKQPLQGIQQPAALHTVSKAANVDNDETS SRILSKRSIQDLVGQASLDLFLYDGAFPYIASFCSIDPSERLDPDVEDILADIADEFVESITTFGCSLAKHRKSDTLEAKDILLHLEKNWNITLPGFSGD EIKTYRKPPTNDVHKERLAAIRKSVLVSETGTGRSVGQAPGSGKSNLTKTPVNPMVSPPNLTKTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	0	1
AT5G09995			unknown protein		Lus10016816 [exp]	1.4	0.9216
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10002542 [exp]	2.8	0.9157
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042584 [exp]	6.3	0.9002
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	6.5	0.9120
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Lus10005014 [exp]	7.7	0.8894
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10029028 [exp]	10.5	0.8289
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	11.4	0.8578
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	12.4	0.8834
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042585 [exp]	16.4	0.8815
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10039009 [exp]	16.5	0.8905

Compare expression of checked genes

Lus10003250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.