Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36310 540 / 0 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) AT1G05620 337 / 1e-115 NSH2, URH2 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) AT5G18870 51 / 3e-07 NSH5 nucleoside hydrolase 5, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18890 45 / 5e-05 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035601 [exp] 662 / 0 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10042608 [exp] 348 / 9e-120 AT1G05620 521 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10022062 [exp] 337 / 2e-115 AT1G05620 506 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10041249 [exp] 58 / 5e-09 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10033998 [exp] 55 / 5e-08 AT5G18860 899 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10012778 [exp] 50 / 2e-06 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083400 [exp] 565 / 0 AT2G36310 534 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Potri.007G144600 [exp] 344 / 2e-118 AT1G05620 524 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Potri.008G197500 [exp] 60 / 1e-09 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197400 [exp] 54 / 1e-07 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01156 [flax] [poplar] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Lus10003251 pacid=23182527 polypeptide=Lus10003251 locus=Lus10003251.g ID=Lus10003251.BGIv1.0 annot-version=v1.0 ATGGCGCAAACCAATGGTGTAGTTCCCGACGGCCTATTTGCTTCTTCTGCTAAGCCTGGGAAGCTTATTATCGATACAGACCCTGGGATCGATGATAGCA TGGCAATTTTGATGGCTTTTCAAACTCCTGAAGTAGAAATCTTAGGCTTCACAACAGTATTTGGTAATGTTGCCACAGAAGATGCCACTCGCAATGCTTT GCTTCTGTGTGAGATTGCTGGCCGTCCTGATATTCCGGTTGCAGAGGGCTCTCATGAACCTCTAAAGGGAGGGAAGCCCCGTGTTGCTGACTTTGTCCAT GGCTCTGATGGTCTGGGAAACACATACTTGTCTCCCCCAAACGCAGAGAAAAGTCCAAAGACTGCTGCTCAATTTTTAGTTGACAAGGTGTCAGAGTTCC CTGGTGAAGTATCGGTCCTTGCGCTTGGGCCATTGACAAATGTGGCCTTGGCAATCAAAAGGGACTCCTCATTTGCAAGCAAAGTAAAAAAGATTGTAGT TCTTGGCGGAGCCTTCTTTGCTTTGGGAAATGTAAACCCTGCTGCTGAAGCAAATATCTATGGAGATCCAGAAGCAGCAGATGTCGTGTTTACATCTGGA GCAGACATTGTTGTCGTGGGAATAAACATTACAACTCAAGTAAAACTAACGGATGCTGACCTTCTTGAGTTGAGGCAGTCGAAAGGGAAGTATGCTCAGG TAATATGCAATATGTGCAAGTTCTACAGGGATTGGCATGTGAAGTCTGATGGAATCCACGGCATTTTTCTTCATGATCCGGTGAGCTTTGTGGCGGTAGT TCGGCCTGATCTGTTCACATATAGGAAGGGAGTTGTGAGGGTGGAGACTCAGGGAATCTGTGTAGGGCACACCCTAATGGACCAAGGGCTCAAAAACTGG AATTCAAGCAACCCGTGGTCTGGATACTCGCCGGTGTCAGTAGCGTGGACGGTTGACGTGGACAAAGTTCTTGCATATGTGAAGAAGCAGCTGACAAAAG CATGA
AA sequence Show only first row Show all	>Lus10003251 pacid=23182527 polypeptide=Lus10003251 locus=Lus10003251.g ID=Lus10003251.BGIv1.0 annot-version=v1.0 MAQTNGVVPDGLFASSAKPGKLIIDTDPGIDDSMAILMAFQTPEVEILGFTTVFGNVATEDATRNALLLCEIAGRPDIPVAEGSHEPLKGGKPRVADFVH GSDGLGNTYLSPPNAEKSPKTAAQFLVDKVSEFPGEVSVLALGPLTNVALAIKRDSSFASKVKKIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG ADIVVVGINITTQVKLTDADLLELRQSKGKYAQVICNMCKFYRDWHVKSDGIHGIFLHDPVSFVAVVRPDLFTYRKGVVRVETQGICVGHTLMDQGLKNW NSSNPWSGYSPVSVAWTVDVDKVLAYVKKQLTKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10003251 [exp]	0	1
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10014731 [exp]	2.0	0.8991
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	4.5	0.8810
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	10.2	0.8960
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	11.4	0.8288
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10021745 [exp]	12.3	0.8765
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	12.6	0.8919
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	15.1	0.8875
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	17.7	0.8445
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	18.8	0.8784
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	20.7	0.8772

Compare expression of checked genes

Lus10003251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.