Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 388 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 362 / 2e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 259 / 2e-84 SGNH hydrolase-type esterase superfamily protein (.1) AT5G03590 157 / 3e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 124 / 6e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20130 124 / 3e-31 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G53920 117 / 1e-29 GLIP5 GDSL-motif lipase 5 (.1) AT5G41890 116 / 2e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75900 114 / 2e-28 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035600 [exp] 689 / 0 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 242 / 2e-77 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 237 / 1e-71 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 218 / 8e-70 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034139 [exp] 197 / 8e-61 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 118 / 5e-30 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 116 / 2e-29 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 115 / 6e-29 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 114 / 1e-28 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406500 [exp] 407 / 4e-142 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G237000 [exp] 338 / 3e-115 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 247 / 1e-79 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 246 / 4e-79 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G053100 [exp] 212 / 8e-66 AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G230100 [exp] 155 / 1e-44 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 118 / 4e-30 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024933 [exp] 115 / 7e-29 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G127100 [exp] 114 / 1e-28 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1) Potri.005G024966 [exp] 114 / 2e-28 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003253 pacid=23182537 polypeptide=Lus10003253 locus=Lus10003253.g ID=Lus10003253.BGIv1.0 annot-version=v1.0 ATGGCGAAAACCACCAGCTTCTGCTTCCTCCTTCTCCTCTTCTCCTCCCTCCTGTTTCTCCTCTCAGTGAGTGCAGCGGAGGAGGGTCACGGGCAGCGCC ACCTCTTCAGGTTCAAGCCCAGCAAGCTGTTCGTCTTCGGAGACTCCTACGCCGACACCGGCAACGTCCGCAAAGCCTTAGCCACCTCCTGGAAACTTCC CTACGGTATCACCTTCCCTGGCAGACCAGCCGGCCGTTTCTCCGACGGCCGCGTCCTCACCGATTTCCTTGCAAGGTTCATAGGAGTGAAGTCACCGATC CCATACAAATGGAGGAAAGTTGGCCCGAAATCAGTGAGGTACGGCATGAACTTCGCCTTCGGAGGCACCGGAGTGTTCAACACCCTTAGCCCCGAACCCA ACATGACCACCCAGATTGACCTTCTCCGACAAATGCTCACTCAAAAGACCTACTCCGCCTTTGACCTCCACAACTCCGTCGCCCTCGTCTCTGTCGCAGG CAACGACTACAACACTTACCTCTCCACTAATGGCTCCCTCGAGGATCTGCCAGCGTTCATATCACAAGTCGTGAACCAAACAACCAAAAACCTCCTCCGA ATCCAAGGCATGGGAATCAAGAAAGTAGTGGTCACCGGACTCCCTCCACTGGGGTGCCTCCCAGCAACGACGTCGTTCAACATGTTCCAGCAATGCAACG ACAGCCAGAACCAGCTGGTCACACTCCACAACTTCCTCCTCCGACAATCCATCGCCGACCTGAACCCCAACAACAACGACACGTCATTCATGTTGCTCGA CATGTTCCAGGCGTTCATGGCCGTCCTGGACCAAAAGCCAGCGAAAGAACGAAATAGTAGTAGTAGTGGTAAGGGGAAGTTGTTGTGGAACCCGTTGAAG CCGTGCTGCAAAGGGATGAGTGCGGGGGAAGGGTGCGGGAGCGTGGACGAGAGCACGGGAGGGAAGAGGTATACGGTTTGCGAGGATCCTAAGGCCGCGT TCTTCTGGGATTCGGTGCATCCTACTCAGGAAGGGTGGAGGGCTGTTACGTTTGCTCTCAAGTCTAATCTTCTTTCTGGTTTGATGATTTAG
AA sequence Show only first row Show all	>Lus10003253 pacid=23182537 polypeptide=Lus10003253 locus=Lus10003253.g ID=Lus10003253.BGIv1.0 annot-version=v1.0 MAKTTSFCFLLLLFSSLLFLLSVSAAEEGHGQRHLFRFKPSKLFVFGDSYADTGNVRKALATSWKLPYGITFPGRPAGRFSDGRVLTDFLARFIGVKSPI PYKWRKVGPKSVRYGMNFAFGGTGVFNTLSPEPNMTTQIDLLRQMLTQKTYSAFDLHNSVALVSVAGNDYNTYLSTNGSLEDLPAFISQVVNQTTKNLLR IQGMGIKKVVVTGLPPLGCLPATTSFNMFQQCNDSQNQLVTLHNFLLRQSIADLNPNNNDTSFMLLDMFQAFMAVLDQKPAKERNSSSSGKGKLLWNPLK PCCKGMSAGEGCGSVDESTGGKRYTVCEDPKAAFFWDSVHPTQEGWRAVTFALKSNLLSGLMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10003253 [exp]	0	1
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030453 [exp]	6.1	0.8313
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	15.3	0.8106
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10001497 [exp]	17.3	0.7403
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10022808 [exp]	19.8	0.7735
AT2G21180			unknown protein		Lus10026283 [exp]	20.8	0.7377
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004538 [exp]	22.5	0.7271
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	26.9	0.7684
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10018453 [exp]	29.6	0.7215
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	42.7	0.7633
					Lus10006886 [exp]	44.5	0.6937

Compare expression of checked genes

Lus10003253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.