Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03620 680 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 538 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59090 487 / 4e-162 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59120 481 / 1e-159 ATSBT4.13 subtilase 4.13 (.1) AT5G58840 475 / 8e-158 Subtilase family protein (.1) AT5G59100 474 / 5e-157 Subtilisin-like serine endopeptidase family protein (.1) AT3G46840 468 / 1e-154 Subtilase family protein (.1) AT5G58830 460 / 4e-152 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 457 / 2e-150 Subtilase family protein (.1) AT5G59190 453 / 1e-149 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035598 [exp] 681 / 0 AT5G03620 385 / 7e-128 Subtilisin-like serine endopeptidase family protein (.1) Lus10020582 [exp] 561 / 0 AT5G03620 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10020581 [exp] 548 / 0 AT5G03620 653 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10035599 [exp] 547 / 0 AT5G03620 385 / 3e-128 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 525 / 2e-176 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009313 [exp] 522 / 3e-175 AT4G00230 924 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 509 / 4e-171 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009868 [exp] 503 / 4e-169 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 503 / 5e-169 AT5G59190 600 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114500 [exp] 784 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 592 / 0 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 556 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.010G196800 [exp] 513 / 4e-172 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 504 / 2e-168 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 481 / 6e-160 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.010G196700 [exp] 469 / 2e-156 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 467 / 2e-153 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G037900 [exp] 459 / 3e-151 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G074500 [exp] 435 / 9e-144 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10003254 pacid=23182532 polypeptide=Lus10003254 locus=Lus10003254.g ID=Lus10003254.BGIv1.0 annot-version=v1.0 ATGTCGCCATGGTTGTTTGCACAGCTGATGCTGCTCTCTGCGATTCTCCTCCAATCCTTCACTGATGGGACTGTTGATGAAGAAAGAAAGGTGTACATTG TGTACATGGGAGATGCAGCTGATCCTCAAGATCATCGAGGTCCACTTACCATTTCACCCCTCGACCAGCACCACAACGTGCTCCTCACTGCCACCAGAGA CGAGTCGATTGCGAAAAGTGCAAGAATATACAGCTACACGAGGAGCTTTAACGGGTTCGCAGCCAGACTTTTGCCGGAAGAAGTCGATAGGATACAAGGA CGCGAGGACGTGGTCTCGGTGTTTGAGAGCCAGAAGAAGCAACTCCACACGACTCGATCGTGGGATTTCCTGGGCATGACTGAAGATGTCACGAGGAAAC TAACACTGGAGAGCGACATCATCATTGGTGTATTGGACACCGGAGTGTACCCGGACGCCCCAAGCTTCAACGACACAGGATACTCCCCTCCGCCACTCAA ATGGAAAGGCAAATGCGATTCCGGCCCCAACTTCACCGGCTGCAACAAGTATTACCAAAGTAATCGGCGCAAGATTCTACAACCTCGACAACCTAGACCC AGACTACGACGTCCTAACCACACCGCCGCACGCCCCCCGGCCGCGCCCTCCCGCCCGCCCCCCCCCGCCGCCGGAGCCCCCGTCCAGGACGCCAGCTTGT ACGGCATCGCCAGAGGAACCGCCAGGGGTGGGGTCCCTTCCGCCAGAATCGCTATGTACAAGGTCTGCTGGAGCAACGGCTGCGACGACGTCAACCTGCT CGCCGGGTTCGACGATGCCATCGCCGACGGAGTCGACGTCATATCGATATCCATCGGCGGCAGCGCCAAGGCATTCCATTTGGACCCCATCGCCATCGGA TCGTTCCATGCCATGAAGAAGAAGATCCTTGTGTCCTGCTCCGGCGGTAATGTGGGGCCTGCTTTGGGGACGGTTCAGAACGTTGCGCCATGGATTCTTA CTGTGGCTGCTTCAAACGTTGATAGGCAGTTCAAGACCGCTGGGATATCACTCAACACGTATACACCGGAAAGGGCAATGTACCCACTTACTAGCGGGAG TCAAGCAGCCATGGATCCACTTGGATATGGAAACGCAAGGTTGGATCATCCTGGTTCCGCTATTCATTGCGACAATGGAGTCAGTCTCAAACTAACTATA GCTAAAAACTACTACTGCTGCAGCGCGTGTGATTACGGGACTCTTGACGAGAAGAAAGTGAAGGGGAAGATAATATTGTGCAGGGGAAACGCCAACCAGG ACTATTACATCAGCAAGATGAATGGAACTGGAGTGATCATGACGAGCACCGAGCACTCTGAATATCCTTCCACCACCATCATCCCTGCAACAGTGATTCT TTACGACCAAGGTGAGAAGATTGACACCTACATCAACAACACCAGATACCCTAGGGCTGTCATCTATCAGACCAGGACTGTTGATGCTAGTGGCAGTGCA CCAGCTGTGGCGTCCTTCTCTTCTAGAGGGCCTCAATCTGTCAGCCCCACTATTCTCAAGCCGGACATAGCAGCACCAGGGTTGTCCATATTAGCAGCGT ACTCAAAGCTCACCACGCTAACAGGAGAAAAATCGGACACCCGCCAGTACCCATTCAACATCATATCAGGCACTTCAATGGCGTGCCCACACGCTGCAGC AGCAGCTGCCTACGTAAAAACCTTCCACCCGGACTGGTCACCTGCAATGATCAAGTCCGCCATTATGACCACAGCCAGGCCGTTCAAAATTCCAGCAGAA GGCGAAGGACTAGCCGCAGGTTCTGGAGAAATCAACCCGAGGAAGGCGGTCCACCCCGGTCTTGTCTACGACATCTCAATAAGCAACTACATCAGCTACT TGTGCAAAGAAGGATACAACGAGACTGCAATCAACCTTCTGTACCATGGCAGGAAGAACCTCGCCTGTACGGACTTCAAGCCTGCCAGAGGCCATGATGG CCTCAACTACCCTTCCATGCATTTGCAGCTCAATAGCACGGATACAAACTTCTCCGCAGAGTTTTATAGGACGGTGAAGCAGGTAGGTTATGGAGACTCG GTCTACGTTGCGAAGGTGACTGCACCGCAGGGGATTTCGGTACAGGTGGTGCCGGAGAGGTTGATGTTCAACAAGAAGCATCAGAAGAAGAAGTTTAAGG TCACATTGAGTGGGACATTGGCGAATGGTATGGACATTGCGACTGCTTCGTTAGTGTGGGATGATAATTTGCACACTGTTCTTAGTCCCATAGTAGTGTA TAAACATTGGTATTAG
AA sequence Show only first row Show all	>Lus10003254 pacid=23182532 polypeptide=Lus10003254 locus=Lus10003254.g ID=Lus10003254.BGIv1.0 annot-version=v1.0 MSPWLFAQLMLLSAILLQSFTDGTVDEERKVYIVYMGDAADPQDHRGPLTISPLDQHHNVLLTATRDESIAKSARIYSYTRSFNGFAARLLPEEVDRIQG REDVVSVFESQKKQLHTTRSWDFLGMTEDVTRKLTLESDIIIGVLDTGVYPDAPSFNDTGYSPPPLKWKGKCDSGPNFTGCNKYYQSNRRKILQPRQPRP RLRRPNHTAARPPAAPSRPPPPAAGAPVQDASLYGIARGTARGGVPSARIAMYKVCWSNGCDDVNLLAGFDDAIADGVDVISISIGGSAKAFHLDPIAIG SFHAMKKKILVSCSGGNVGPALGTVQNVAPWILTVAASNVDRQFKTAGISLNTYTPERAMYPLTSGSQAAMDPLGYGNARLDHPGSAIHCDNGVSLKLTI AKNYYCCSACDYGTLDEKKVKGKIILCRGNANQDYYISKMNGTGVIMTSTEHSEYPSTTIIPATVILYDQGEKIDTYINNTRYPRAVIYQTRTVDASGSA PAVASFSSRGPQSVSPTILKPDIAAPGLSILAAYSKLTTLTGEKSDTRQYPFNIISGTSMACPHAAAAAAYVKTFHPDWSPAMIKSAIMTTARPFKIPAE GEGLAAGSGEINPRKAVHPGLVYDISISNYISYLCKEGYNETAINLLYHGRKNLACTDFKPARGHDGLNYPSMHLQLNSTDTNFSAEFYRTVKQVGYGDS VYVAKVTAPQGISVQVVPERLMFNKKHQKKKFKVTLSGTLANGMDIATASLVWDDNLHTVLSPIVVYKHWY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	0	1
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	2.6	0.9377
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	3.7	0.9377
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	4.6	0.9377
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	5.3	0.9286
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10029703 [exp]	5.8	0.7553
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	5.9	0.9255
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10026929 [exp]	6.6	0.6853
					Lus10011218 [exp]	6.9	0.9213
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	7.0	0.8783
AT5G46930			Plant invertase/pectin methyle...		Lus10030926 [exp]	7.2	0.6678

Compare expression of checked genes

Lus10003254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.