Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19490 126 / 6e-31 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035597 [exp] 684 / 0 AT1G19490 188 / 4e-54 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114600 [exp] 252 / 5e-77 AT1G19490 172 / 6e-48 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003255 pacid=23182539 polypeptide=Lus10003255 locus=Lus10003255.g ID=Lus10003255.BGIv1.0 annot-version=v1.0 ATGGACAGATCCAATTGGGCTGTCAGTTGGCGGGCAGGAGACAGGTCAGATACCCACCCCCCACCCCAGCCGCAGAACTGGTCTTATGCTCGGTCGCCAC GTGTATACGTTCCATCCCGACACGTGTCCACTTATAGCTGTGCATTACTAGTACTAGGGAGAAAAGCGGGGGAAAGGGCGCTTGGTGGGCCCAAGTGGTG GTCGGGATTTGCGGAATTTGAAACGTGGCAAGCAGAGATACATGGCGCCGGAACTTTGCACAGAATCGCCACTGCGTTAGCTGGCATGACACGTGGCGCC TTCCCGCTCTCCCTGTGGGCTAAACCAGCCACTACAATGGATTTGGAGAGAGCAGTCGATTGGACTTCAAATTCCAACTCCGAAACTTCTTCGTCTTCTT CCACCTTCTATTTGCCCGCCGATCGCATGGTCCGTATAGAGCTGGAGGCCGCCGAGGCCCTCGCTGATTTGGCCCATTTGGCAAAGCGCCGCGAGTGCAG CAGCGGCGGCGGTGGCGGTTCGCCGAGTAAATGGGGAAGCAAAGGGAAGCGCGCTAAGAAGCGAGTCAAGAGTGAGTCTCCACCTCATGACTCCGCGTTG AATCCTGTCTTTGACTCATCCTCCTCCTCCTTCAAACATCCCCCTCCGGATCAACCTGCTGCGGATTTTCAGCAGAAAATGTGTGAAAGTGTGGTGATAA ACCATGTTAAGCCTGAACAGGATGCCCATATACATAGTCCTTATGCTAGAAGTTTTCCATCCTATGGAGGTGGAAGGTCGAGGCAAAATTTAACCGAGGC TGAGAAGGAAGCCAGGAGATTGCGTAGGATTTTGGCCAATAGAGAGTCTGCCAGACAGACAATTCGCCGTAGGCAGGCTCTGTGTGAAGAATTAACTAGG AAAGCTGCAAGTCTAGCCTTGGAGAATGAGAACTTAAAGAGGGAAAAGGAGTTAGTCCTGAAAGAGCAGCAGTTCCTGGAGTCGACTAATAAGCAGTTAA AGACACAGATGGCTCATAATAAGGCACTAAAAGCTGAGGAGGAGGAGGAGGAAGCTGGAGTAGAGCTTAAACCATCCTGGTTTCATATGCCTTTCCATCA GCCAACAAACTGCCAGATGATATTTTACAACCAGCATCCACTTTCACAACTTTGCTGGCCTTCCATCATTCAATCTTCAAATGCTGTCCAATCACAACAG GAAATCCACGAAAATAGAACCACCTCACTATGTCTAATGTCCTGCCCTTGGTTTCTGCCCCTTGCTGATAGTAGTGCAAATGGCCAGAACGCAGTTTCTG TTGATGACCAATGCTGCGGGAGCTCATCTTCGCAGCCTCTTGCTGCTCCGTTGAAGCTCAAACCGGAGGCTGGTAGCTCACCGGAAGTCAGACTCATTAA CGACCTCAACGAGTTTCCAATGGGAGAAAGAGGTGGGGAATACAGTGGGAAACAAAACGAGGTTTTTTTAACACCTGCATCAGTAAGTTGTGTTAGTACT ACACCTTCTAGTGGTGTTAAAAGTGAGATAGGTTTGCAGTCTTGCAGTGGAGCAGGTGCTGACGCCTACCACCAACATAATAAAGCTAGCCAACCAGACG CCTGTGGCTATCCTGAGAAAGTCTGTGACGATCCATTCAGTTTTACGAACAAGAAGCCGGTGGATGCAGCTGCTGCAACAATGGCTAGGAGGAGGAGAAA AGAACTTACACGGTTAAAGCACCTTCATGGGGCACGCCAATGTCGAATGAACTGTTGA
AA sequence Show only first row Show all	>Lus10003255 pacid=23182539 polypeptide=Lus10003255 locus=Lus10003255.g ID=Lus10003255.BGIv1.0 annot-version=v1.0 MDRSNWAVSWRAGDRSDTHPPPQPQNWSYARSPRVYVPSRHVSTYSCALLVLGRKAGERALGGPKWWSGFAEFETWQAEIHGAGTLHRIATALAGMTRGA FPLSLWAKPATTMDLERAVDWTSNSNSETSSSSSTFYLPADRMVRIELEAAEALADLAHLAKRRECSSGGGGGSPSKWGSKGKRAKKRVKSESPPHDSAL NPVFDSSSSSFKHPPPDQPAADFQQKMCESVVINHVKPEQDAHIHSPYARSFPSYGGGRSRQNLTEAEKEARRLRRILANRESARQTIRRRQALCEELTR KAASLALENENLKREKELVLKEQQFLESTNKQLKTQMAHNKALKAEEEEEEAGVELKPSWFHMPFHQPTNCQMIFYNQHPLSQLCWPSIIQSSNAVQSQQ EIHENRTTSLCLMSCPWFLPLADSSANGQNAVSVDDQCCGSSSSQPLAAPLKLKPEAGSSPEVRLINDLNEFPMGERGGEYSGKQNEVFLTPASVSCVST TPSSGVKSEIGLQSCSGAGADAYHQHNKASQPDACGYPEKVCDDPFSFTNKKPVDAAAATMARRRRKELTRLKHLHGARQCRMNC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10003255 [exp]	0	1
AT5G27510			Protein kinase superfamily pro...		Lus10034285 [exp]	56.7	0.5966
					Lus10025138 [exp]	71.9	0.5975
AT5G28646		WVD2	WAVE-DAMPENED 2, TPX2 (targeti...		Lus10000016 [exp]	161.6	0.5415
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10014705 [exp]	213.0	0.5422

Compare expression of checked genes

Lus10003255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.