Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03430 105 / 9e-30 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT3G16360 104 / 2e-29 AHP4 HPT phosphotransmitter 4 (.1.2) AT3G21510 104 / 3e-29 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT3G29350 101 / 5e-28 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT5G39340 100 / 2e-27 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT1G80100 71 / 2e-16 AHP6 histidine phosphotransfer protein 6 (.1.2) AT4G04402 58 / 3e-11 two-component phosphorelay mediator, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035596 [exp] 293 / 8e-104 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10000926 [exp] 133 / 1e-40 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 127 / 3e-38 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10012777 [exp] 126 / 7e-38 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10002256 [exp] 120 / 1e-35 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10038280 [exp] 107 / 2e-30 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10025821 [exp] 103 / 8e-29 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10023127 [exp] 99 / 7e-27 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10011487 [exp] 99 / 2e-26 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028300 [exp] 123 / 1e-36 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.005G040400 [exp] 118 / 1e-34 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.016G113500 [exp] 116 / 4e-34 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.001G189900 [exp] 113 / 9e-33 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.006G098200 [exp] 112 / 2e-32 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.010G027100 [exp] 110 / 1e-31 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.008G197600 [exp] 108 / 1e-30 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.018G046800 [exp] 107 / 2e-30 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.006G236300 [exp] 107 / 2e-30 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2) Potri.003G032400 [exp] 101 / 7e-28 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10003256 pacid=23182508 polypeptide=Lus10003256 locus=Lus10003256.g ID=Lus10003256.BGIv1.0 annot-version=v1.0 ATGGCGTTACCATATTTCAAGGCACAGCTTAACAGCCTACTGCAATCCATGTTCGATCAGGGAATGCTGGATAGCCAGTTCACTCAGATTCAAGCTCTGC AAGATGACACCAACCCTACTTTTGTAGCTGAAGTCATCTCAGCTTTCTGCAGTGATGCTGAGCGGATCATTATCGAACTCAACAAGTCCCTGAGTCATCA GAACGTGGACTTCTCCAAGTTGGATGCTTTTCTTCACCAGCTCAAAGGAAGTAGCTCCAGCATTGGGGCTCATCGATTGAAAGTTGCTTGTGTCGAACTC CGGCAAGCTTCTAATGACAAGAACAAGGCAAGGAGTCTACAAGCGTTGAACATCGTGACTCGAGAGTATTGCCTCGTGAGGAGCAACTTCGAGACCTTTC TTACGATCGAGAAGCGAATCTTTATGATCGAGAACGCACCATAA
AA sequence Show only first row Show all	>Lus10003256 pacid=23182508 polypeptide=Lus10003256 locus=Lus10003256.g ID=Lus10003256.BGIv1.0 annot-version=v1.0 MALPYFKAQLNSLLQSMFDQGMLDSQFTQIQALQDDTNPTFVAEVISAFCSDAERIIIELNKSLSHQNVDFSKLDAFLHQLKGSSSSIGAHRLKVACVEL RQASNDKNKARSLQALNIVTREYCLVRSNFETFLTIEKRIFMIENAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	0	1
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	1.0	0.8326
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018411 [exp]	3.0	0.7284
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	11.2	0.6682
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	18.2	0.7288
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	19.3	0.6968
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10000974 [exp]	21.9	0.6599
AT1G11160			Transducin/WD40 repeat-like su...		Lus10041006 [exp]	23.2	0.6618
AT5G04520			Protein of unknown function DU...		Lus10017450 [exp]	24.1	0.6801
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	43.0	0.6942
					Lus10035529 [exp]	48.1	0.6906

Compare expression of checked genes

Lus10003256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.