Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52870 548 / 0 IQ calmodulin-binding motif family protein (.1) AT3G58480 333 / 5e-109 calmodulin-binding family protein (.1) AT2G26190 326 / 7e-107 calmodulin-binding family protein (.1) AT5G57010 323 / 5e-106 calmodulin-binding family protein (.1) AT3G13600 325 / 2e-105 calmodulin-binding family protein (.1) AT4G33050 316 / 2e-103 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035595 [exp] 858 / 0 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10039178 [exp] 410 / 2e-138 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 401 / 7e-136 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 404 / 9e-136 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 400 / 1e-135 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 324 / 8e-107 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10013526 [exp] 327 / 1e-106 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10016219 [exp] 323 / 4e-105 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 315 / 3e-102 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114700 [exp] 631 / 0 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.016G034100 [exp] 418 / 2e-144 AT3G52870 367 / 3e-124 IQ calmodulin-binding motif family protein (.1) Potri.018G061901 [exp] 387 / 2e-130 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 380 / 5e-128 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 365 / 1e-121 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 352 / 2e-115 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 333 / 2e-108 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 333 / 5e-108 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 321 / 5e-104 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 305 / 9e-101 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003257 pacid=23182515 polypeptide=Lus10003257 locus=Lus10003257.g ID=Lus10003257.BGIv1.0 annot-version=v1.0 ATGCCGGTGGCTGAACCGGAGGTTCTCGACGGGGATAGGTCGCTGGAGGTGACCACGCCGCGAGGTAGCGGATCGGACACCGCCGCGGTGAAGTTGCAGA AGGTGTATCGGAGTTACCGGACGAGGCGTAGGTTAGCGGACTCTGCCGTGGTCGCGGAAGAGCTCTGGTGGCAAGCGATTGATTATGCGAGATTGAACCA CAGCACTGTTTCTTTCTTCAATTTCTCGAAGCCAGAAACCGCTGCTTCAAGATGGAATCGTGTTAGCTTGAATGCGTCCAAGGTGGGGAAGGGTTTATCA AAAGATGCAAAAGCACAAAAGCTGGCTTTTCAACATTGGATTGAAGCTATTGATCCGAGGCACCGATATGGACACAGCTTGCATATATATTACGACGAGT GGTGCAAGGCTGATTCTGGACAGCCATTCTTTTACTGGTTGGACATTGGAGATGGTAAAGAGCTTGATCTGAAGGAATGCCCTAGGTCAAAGCTTCGACA ACAATGCATCAAGTACCTAGGACCTCAAGAGCGAGAGCATTATGAGTACATATTTGTAGAAGGAAAGATGACTCACAAGCTGACCGGTAATCTACTTGAC ACAACTAAGGGAGCTAAGTGGATATTTGTCATGAGCACCTTCGATAGACTGTATGCTGGCGAAAAAAAGAAAGGAATATTTCATCATTCAAGCTTCCTGG CTGGTGGTGCTACATTGGCAGCTGGAAGGCTGGTGGCTGAGCAAGGAATTATTAAGGGCATCTCACCATACAGTGGACATTACCGGCCAACAGAAGAAAC TCTCGAAACCTTCATATCCTATCTCAAGGACAATGGCGTCAACATGGATAATGTCCAGATAAACAAGGCCAGTGAAGATTCTGATATCTACGACGAAAGC AAGCTCTCTCAAAGTGGGTTGAGTATAGACATTCCTTGGAACACAATGATCCCCGTTCCTAGTGTAGAGATTTCCACGGCAGAAGAAGTCCTCTTGGATG CCAAGCAAACCGACAAAAAAGGTGAATACAAAAGGACCTTATCCGGTGGCCTCCAGAGTCCACGAGCAGAAGTTCCCAAGGCATCAATACTGCAAAGAAT CAACTCCAAGAAAGCTGCAAAATCTTACCAACTCGGGCATCAAGTCTCGCTCAAATGGTCGACAGGAGCCGGTCCGAGGATCGGCTGCATGGCTGATTAC CCTGTTCAAGTTAGATCACAGGCCCTTGAGTTTGTTAACCTTTCTCCAAGAAGCCTACCAACTCCTCGATCCCGATTATCCGGCCTCACCTCACCTAAAT CTGAACAACCATATATGCCATAG
AA sequence Show only first row Show all	>Lus10003257 pacid=23182515 polypeptide=Lus10003257 locus=Lus10003257.g ID=Lus10003257.BGIv1.0 annot-version=v1.0 MPVAEPEVLDGDRSLEVTTPRGSGSDTAAVKLQKVYRSYRTRRRLADSAVVAEELWWQAIDYARLNHSTVSFFNFSKPETAASRWNRVSLNASKVGKGLS KDAKAQKLAFQHWIEAIDPRHRYGHSLHIYYDEWCKADSGQPFFYWLDIGDGKELDLKECPRSKLRQQCIKYLGPQEREHYEYIFVEGKMTHKLTGNLLD TTKGAKWIFVMSTFDRLYAGEKKKGIFHHSSFLAGGATLAAGRLVAEQGIIKGISPYSGHYRPTEETLETFISYLKDNGVNMDNVQINKASEDSDIYDES KLSQSGLSIDIPWNTMIPVPSVEISTAEEVLLDAKQTDKKGEYKRTLSGGLQSPRAEVPKASILQRINSKKAAKSYQLGHQVSLKWSTGAGPRIGCMADY PVQVRSQALEFVNLSPRSLPTPRSRLSGLTSPKSEQPYMP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52870			IQ calmodulin-binding motif fa...		Lus10003257 [exp]	0	1
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10011243 [exp]	3.9	0.7717
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	11.0	0.7724
AT3G30390			Transmembrane amino acid trans...		Lus10007716 [exp]	15.6	0.7378
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10037648 [exp]	16.8	0.7936
AT1G50670			OTU-like cysteine protease fam...		Lus10040075 [exp]	23.8	0.7626
AT2G23090			Uncharacterised protein family...		Lus10011535 [exp]	28.4	0.7607
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	29.0	0.7189
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	29.9	0.7613
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10014009 [exp]	35.9	0.7334
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	39.2	0.7540

Compare expression of checked genes

Lus10003257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.