Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12030 148 / 1e-42 Protein of unknown function (DUF506) (.1) AT1G62420 141 / 7e-40 Protein of unknown function (DUF506) (.1) AT3G07350 126 / 5e-34 Protein of unknown function (DUF506) (.1) AT3G25240 117 / 1e-30 Protein of unknown function (DUF506) (.1) AT4G32480 105 / 4e-26 Protein of unknown function (DUF506) (.1) AT2G38820 104 / 5e-26 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 100 / 7e-24 Protein of unknown function (DUF506) (.1) AT3G22970 90 / 7e-21 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G20670 90 / 1e-20 Protein of unknown function (DUF506) (.1) AT2G39650 87 / 1e-19 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035594 [exp] 438 / 1e-155 AT1G62420 179 / 3e-54 Protein of unknown function (DUF506) (.1) Lus10002335 [exp] 132 / 8e-38 AT3G07350 177 / 7e-56 Protein of unknown function (DUF506) (.1) Lus10003174 [exp] 135 / 2e-37 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10014718 [exp] 119 / 1e-30 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 117 / 7e-30 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 112 / 7e-28 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 106 / 5e-26 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 105 / 1e-25 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 106 / 2e-25 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001400 [exp] 164 / 2e-48 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.011G023301 [exp] 159 / 3e-46 AT1G62420 195 / 1e-60 Protein of unknown function (DUF506) (.1) Potri.009G144600 [exp] 126 / 3e-34 AT3G07350 271 / 1e-90 Protein of unknown function (DUF506) (.1) Potri.004G184700 [exp] 124 / 2e-33 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.002G046300 [exp] 107 / 2e-26 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 105 / 8e-26 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G071500 [exp] 99 / 3e-24 AT1G77160 155 / 2e-46 Protein of unknown function (DUF506) (.1) Potri.008G159800 [exp] 100 / 1e-23 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.019G099600 [exp] 97 / 6e-23 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.005G188100 [exp] 95 / 9e-23 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10003258 pacid=23182518 polypeptide=Lus10003258 locus=Lus10003258.g ID=Lus10003258.BGIv1.0 annot-version=v1.0 ATGGCGAGAATCAAAGCTCCTGTAACTGCGAAACTGAACATGCTCGCCATCGCTTTCGACCAGGCGGCGGCTATGGCGATAACCCGCCAGAAGCAGCCCT GCGAGAGCAGCGGCAGCGAGCATTTCAACTCCTCCTCCGTTGACTCGCCAGCCGCGGTTAACCTCTCCGATCTCGTCAATTCCTTCCTCGAGCAAGATTA CACTTACAAAGATGGAAACTTCCGACGCGATTTCGACGATGAGAATGTCGATTCGTTTGACGCCGTGGCGTACGACGAATCGAAATCTGAGCTGGAGAAA TTGTTAAATGGAGACGGTGAGGATGATGATGAAGAGAGGGAGATGATCAGGGGCGAAACAGAGAGAGCTCTGCAAGCTGATGTCGGGATTGACGAGGGGT TTAAACGCCGTTTGATGTCTCGACTCCGTGATGCTGGATTTGACGCCGGGCTCTGCAAATCGCGGTGGGAGAAGAATGGGAGGCGATTAAGCGGGAGATA CGAGTACATTGACGTGAAGGTCAAAGTCGGAGGAGGAGTAAAGCGGTACGTTGTGGAGGTGAATCTGGGGGCGGAGTTCGAGGTGGCGAGGCCGACGGCG GAACACGCGGCGATGCTGAACTCCATCCCGGAGGTGTACGTGGGGAAGGCGGAGGAGATGAGGAAGATTGTGAAGCTGATGTGCGGGGTAGTGAGGCAGT CTATGAAAGCGGCGGAGATGCAAGTGCCCCCGTGGAGAAGGAGTGCCTACATGGAAGCCAAGTGGTTCGGGCCTTACAAGCGGACGGTGAACGGTGCGCC GTCCCAGGCAGAGCCGATGTCCTTTCCGGGGAAACGGGAAGTCGGATTCGGGGCGGGTTTACCGGGAGTCGGCGCCGTGGCGAGGGTCCCGCGGGGAAGT GGTGGTTTGGGCCTTAATAAGGTCAGCCGTTTGACGACGGCGCTTGAGGCATAA
AA sequence Show only first row Show all	>Lus10003258 pacid=23182518 polypeptide=Lus10003258 locus=Lus10003258.g ID=Lus10003258.BGIv1.0 annot-version=v1.0 MARIKAPVTAKLNMLAIAFDQAAAMAITRQKQPCESSGSEHFNSSSVDSPAAVNLSDLVNSFLEQDYTYKDGNFRRDFDDENVDSFDAVAYDESKSELEK LLNGDGEDDDEEREMIRGETERALQADVGIDEGFKRRLMSRLRDAGFDAGLCKSRWEKNGRRLSGRYEYIDVKVKVGGGVKRYVVEVNLGAEFEVARPTA EHAAMLNSIPEVYVGKAEEMRKIVKLMCGVVRQSMKAAEMQVPPWRRSAYMEAKWFGPYKRTVNGAPSQAEPMSFPGKREVGFGAGLPGVGAVARVPRGS GGLGLNKVSRLTTALEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001103 [exp]	1.0	0.9871
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	2.2	0.9779
AT1G17860			Kunitz family trypsin and prot...		Lus10013731 [exp]	5.5	0.9790
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	5.7	0.9723
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	5.7	0.9832
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	7.3	0.9686
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	10.7	0.9760
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039469 [exp]	11.5	0.9784
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039746 [exp]	16.1	0.9706
AT1G17860			Kunitz family trypsin and prot...		Lus10007892 [exp]	17.7	0.9695

Compare expression of checked genes

Lus10003258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.